Aequorivita sublithincola: Aeqsu_2012
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Entry
Aeqsu_2012 CDS
T02132
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
asl
Aequorivita sublithincola
Pathway
asl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Aeqsu_2012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asl03021
]
Aeqsu_2012
03400 DNA repair and recombination proteins [BR:
asl03400
]
Aeqsu_2012
Enzymes [BR:
asl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Aeqsu_2012
Transcription machinery [BR:
asl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Aeqsu_2012
DNA repair and recombination proteins [BR:
asl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Aeqsu_2012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
AFL81478
UniProt:
I3YWW0
LinkDB
All DBs
Position
2155817..2159629
Genome browser
AA seq
1270 aa
AA seq
DB search
MSATQTERLNFSSVKNKPDYPDFLDIQIKSFQDFFQLETKSEERGQEGLYKTFLENFPIT
DTRNQFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDAEHEDFETIVQDVY
LGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKASKTGLKKYIGRKL
AARVLKTWHEDFVDEDTGEVVSIERNEIILDRDTVLEKEHIDEILDSGAKTILLHKEDNL
LADYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIHKLFFSDQRYNLGEV
GRYRMNKKLGLDIAMDKQVLTKEDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVFAK
VNNLGFIETPYRKVTDGKVDFKNEPIYLSAEEEEDMHIAQANIPLTDKGVIDTDKVIARM
EGDFPLVDPTVLHYADVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLMISDSP
IVGTGLERQVASDSRVLINAEGDGVVEYVDANEITIKYDRTDEQRMVSFDADEKTYQLVK
FRKTNQGTSINLKPIVSKGDRVKKGQVLCQGYATEKGELALGRNMKVAFMPWKGYNFEDA
IVISERVVREDIFTSIHIDEYSLEVRDTKLGNEELTNDIPNVSEEATKDLDEAGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVIEKKLFA
RAVKDKRKRAKDKEDIAELEAKYYAKFDELQDVLVEKLFTIVGGKTAQGINNDLGEIVFP
KGKKFTLKMLHAVDDYTHLTGGVWTTDDETNVLVADLMHNYKIKENDLQGNLRREKFTIS
VGDELPSGILKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVREEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQKLGRKYATPIFDGATIDQINELTDEAGIPRFGHTY
LFDGGTGKRFDQPATVGIIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGETMPEPGLPESFNVLMHELK
GLGLDIRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaacgcaaactgaaagattgaatttttcctctgtaaaaaataagccggactat
cccgactttttggacattcagattaaatcctttcaggattttttccagttggaaaccaaa
tcagaagaaagaggccaagaaggtttatacaaaacctttttggaaaatttcccgataacc
gatactcgcaaccaattcgttttagagtttttagactatttcgtagatcccccaagatat
tccattcaggaatgtattgaacgcggtctaacctatagcgtacctctaaaagcacggttg
aaactgtactgtacagacgcagaacacgaagattttgaaaccatagttcaggatgtttac
ttaggtactattccatacatgaccccgagcggaactttctgcatcaatggggccgagcgt
gttgttgtttctcaacttcaccgttcgccaggtgtattctttggccagtctttccatgca
aatggaacaaagctatattctgcccgtgtaattccttttaaaggttcatggattgaattc
gccacagatatcaacagcgtaatgtacgcctacattgaccgtaagaaaaagttaccggtt
accacacttttccgtgctatcggtttcgaaagagataaagatattcttgaaatatttgac
cttgcggaagaagtgaaagcttcaaaaacaggacttaaaaaatacattggtcgtaaactt
gccgctcgtgtgctaaaaacttggcacgaggatttcgtagatgaagatacaggcgaggtt
gtttccattgaacgtaatgagattattttagaccgtgataccgttcttgaaaaggaacac
attgatgaaatactcgattctggagctaaaacaattttattgcacaaagaggataacctt
ttggcagattacgccattatccacaataccttacaaaaagatcctaccaactctgaaaaa
gaagcggtagaacatatatatagacaacttcgtaacgctgaaccgccagatgaggaaact
gctcgtggaattatccacaaacttttctttagcgaccaaagatataatcttggggaagta
gggcgttacagaatgaacaaaaaactgggtcttgatatcgctatggacaagcaagtgctt
accaaagaagatatcattactatagttaaatacttaatcgagcttatcaactctaaagct
gaaattgatgatattgaccacttatctaaccgtcgtgtacgtactgtaggtgagcaatta
tcacaacaatttggtgttggtcttgcacgtatggcgcgtaccattcgcgaacgtatgaac
gttcgtgacaacgaggtgtttacacctattgatttgattaatgcgaagactttgtcttct
gtaattaactcattctttggtactaaccaactttcacaatttatggatcaaactaacccg
ttggcagagattacgcacaagcgtcgtctttctgcactagggccaggaggtctatctcgt
gaaagagcaggtttcgaagttcgtgacgttcattatacgcactacggtcgtctttgcccg
attgaaactcctgaagggccaaacattggtttgatttcttctcttgcagtttttgcgaag
gtgaacaatcttgggtttattgaaacgccatatcgaaaagtgacagatggaaaagttgac
ttcaaaaatgaacctatctatctttctgcagaagaggaagaagatatgcacattgcacaa
gctaacattccattgacggataaaggggttatagatacagataaggttattgctcgtatg
gaaggtgacttcccactagtagacccaactgttttgcattatgcagatgttgcgccaaac
cagattgcatcaatttctgcatcgttaattcctttcttggaacacgatgatgcaaaccgt
gcactgatgggatcaaacatgatgcgtcaggcagtaccgttaatgatttctgattctcca
atcgttggaactggtcttgaaagacaagttgcttcagattcacgtgttttgataaatgcc
gaaggagatggtgtggtagaatatgttgatgcaaacgaaatcactattaaatatgaccgt
accgatgagcagcgtatggttagttttgatgctgacgaaaaaacataccaacttgtaaaa
ttcagaaaaaccaaccaaggtacttccattaacttgaagcctattgttagcaaaggcgat
agagtgaaaaaaggacaagtactttgtcaaggttacgctactgaaaaaggagaacttgca
cttggacgaaacatgaaggttgccttcatgccttggaaaggttacaactttgaggatgca
atcgttatttctgaaagagtagttcgtgaagatattttcacttctatacatattgatgag
tattcattggaagttcgagataccaaattgggtaacgaagaattaacaaatgatattcca
aacgtttcagaagaagctactaaagatttagatgaagcgggtatgattcgtataggagca
gaggtaaaacctggcgatatccttatcggaaaaattactccaaaaggagaaagcgatcca
acacctgaagaaaaacttcttcgcgctatttttggagacaaagctggtgatgtgaaagat
gcttcccttaaagcttcaccatcattacatggtgttgtaattgagaaaaagttgtttgct
cgcgccgtaaaagacaaacgcaaacgtgctaaagacaaagaagacatcgcagaacttgaa
gcaaaatactatgctaagtttgatgaacttcaagatgttttggttgaaaaacttttcaca
attgttggaggtaaaactgcacaaggaatcaataatgatcttggtgaaatagtatttcca
aaaggtaaaaagttcacattaaaaatgcttcacgctgttgacgattacactcacttaact
gggggtgtttggacaacggatgatgaaaccaacgtgttggttgcagatttaatgcacaac
tataaaattaaggaaaacgaccttcaaggtaacttgcgtcgtgagaagtttacaatctct
gttggagatgaacttccatccggaattttgaaacttgctaaagtttacatcgctaaaaag
cgtaaactaaaagtaggagacaagatggcgggacgtcacggaaacaaaggtattgttgca
cgtattgtacgtgaagaagatatgcctttccttgaagatggaactcctgtagatatcgtg
ctgaacccacttggggtaccatcgcgtatgaacattgggcaaatttatgaaaccgttctt
ggatgggctggacaaaaattaggtcgcaaatatgcaaccccaatttttgatggtgcaacg
atagaccagataaatgaattgactgatgaagctggaattccaagatttggacatacctat
ctatttgacggtggaactggtaagcgttttgatcaacctgcaaccgtaggtataatctat
atgctgaaactaggccacatggtagatgataaaatgcacgcacgttccataggaccttac
tcacttattacacaacagcctcttggtggtaaagcacaatttggtggtcagcgttttgga
gagatggaagtttgggccttggaagcttatggtgcatccagcacgcttagagaaatattg
actgttaaatctgatgatgttattggaagggcgaaaacctacgaagcaatcgtaaaaggt
gaaaccatgccagaaccaggattaccagaatctttcaacgtacttatgcacgaattgaaa
ggattgggtcttgacattagattagaggaataa
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