KEGG   Aequorivita sublithincola: Aeqsu_2263
Entry
Aeqsu_2263        CDS       T02132                                 
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
asl  Aequorivita sublithincola
Pathway
asl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:asl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Aeqsu_2263
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:asl03019]
    Aeqsu_2263
   03400 DNA repair and recombination proteins [BR:asl03400]
    Aeqsu_2263
Enzymes [BR:asl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Aeqsu_2263
Messenger RNA biogenesis [BR:asl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Aeqsu_2263
DNA repair and recombination proteins [BR:asl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Aeqsu_2263
SSDB
Motif
Pfam: DEAD RecQ-1-like_HTH RQC Helicase_C HRDC RecQ_Zn_bind ResIII HTH_40 HHH
Other DBs
NCBI-ProteinID: AFL81723
UniProt: I3YXK5
LinkDB
Position
2441613..2443805
AA seq 730 aa
MAETDIYAALKKYFGFTRFKGLQEEVIKSILQGNNTFVVMPTGGGKSLCYQLPALMQEGT
AIVVSPLIALMKNQVDALRALSSEEGIAHVLNSSLNKTEVKNVKADIASGITKLLYVAPE
SLTKEEYVNFLQTQKISFMAIDEAHCISEWGHDFRPEYRNLKSIIQRIGDNIPIIGLTAT
ATPKVQEDILKNLNMQDANTFKASFNRPNLYYEIRPKTKNVDSDIIRFVKQNEGKTGIIY
CLSRKRVEELAQALQVNGIKAVPYHAGLDGKTRVKHQDMFLMEDVDVVVATIAFGMGIDK
PDVRFVIHNDIPKSIESYYQETGRGGRDGGEGHCLAFYSYKDIEKLEKFMSGKPVAEQEI
GHALLQEVVGFAETSMSRRKFILHYFGEEFDNETGDGGMMDDNMRYPKKKHEAKDNAKLL
LEVVSKTNEQYKSKEVVNVLVGKVNALIKSHRTDAQQYFGTGANQDSAYWMALLRQLLVA
GFLKKDIETYGVIHLTDAGKKFIKSPTSFMMTEDHSFKDANDDVIVSANKGGEVLDVNLF
KILKAELKKVAHDLDLPPFVIFQEPSLEDMALKYPVTMEELSNVHGVGEGKAKKYGKSFL
KLIQNYVEENDIIRPEDFVVKSTGSNSSLKLYIIQNVDRKLALPDIANAKGLEMREFIKE
MEAIVYSGTKLNIDYWVEEVLDEDQQEEIHEYFLEAKTDSIEEALEEFDGDYDEEELRLY
RIKFISEVGN
NT seq 2193 nt   +upstreamnt  +downstreamnt
gtggcagagactgacatttacgcagcgctaaaaaaatattttggatttactcgctttaaa
ggcctgcaagaagaagtaataaaaagcattcttcaaggtaacaatacgtttgtggttatg
cccacaggcggtggaaaatccctttgttaccaacttcccgcacttatgcaggaaggtacc
gcaattgtggtttcgccacttattgccttgatgaaaaaccaagtggatgccttgagagcc
ctttcttctgaagaaggaattgctcatgttttaaactcttctctcaacaaaacagaggtt
aaaaacgtaaaggcagatattgccagcggcattacgaaattactttacgttgctcccgaa
tccctcaccaaagaagaatacgttaattttctgcaaacccagaaaatatcttttatggcc
atagatgaagcgcattgcatcagcgaatggggccacgactttagaccagaataccgaaac
ttaaaaagtattattcagcgtattggggacaatattccaataatcggacttacggctact
gcaactccaaaagtgcaggaggatatactgaaaaatcttaatatgcaggatgccaatact
tttaaagcatcctttaaccgtcctaatctgtactatgaaataaggccgaaaacaaaaaat
gtagattcagacattattcgtttcgtaaaacagaacgaaggtaaaactggaattatttac
tgtttaagcagaaaaagagtagaagaactcgcgcaagcattgcaagtgaatggtataaaa
gctgtgccttatcatgctggtctagacggtaaaacccgcgtaaaacatcaagatatgttt
ttgatggaagacgtagatgtggttgttgcaaccatagcttttgggatggggatagacaaa
ccagacgttcgttttgtaattcacaacgatattccaaagagcattgaaagctattaccaa
gaaacaggtcgcggcggaagagacggtggcgaagggcattgtctggctttttatagctat
aaagacattgaaaagctcgagaaatttatgagcggcaaacccgttgccgagcaggaaatt
ggacacgctcttttacaggaagtggttggttttgctgaaacttctatgtcccgaagaaaa
tttattcttcattattttggggaagaatttgacaatgaaactggcgatggcggaatgatg
gatgataatatgcgctatccaaaaaagaaacacgaagcaaaagataatgcaaaactgcta
ttagaagtagtttccaaaaccaacgagcagtataaaagtaaagaggttgtaaacgtttta
gtagggaaagtaaacgccctcataaagtcccacagaaccgatgcccaacaatactttggt
accggtgcaaaccaagattccgcctattggatggcattgttacgtcaacttttggtagct
ggatttttaaagaaggatatagaaacctacggagtcattcatttaacagatgccgggaag
aagttcataaaatcaccaacttcgtttatgatgacggaagaccattcctttaaagacgcc
aatgatgacgtgattgtttcggcaaataaaggaggtgaggttttggacgtaaaccttttc
aaaattttaaaagcagaacttaaaaaggtagcacacgatttagatttgccgccattcgta
atttttcaggagccttctttggaagatatggcgcttaaatatcctgtaactatggaggag
ctttccaacgttcacggggtaggagaaggaaaagcgaaaaaatatggtaagtctttctta
aaactgattcaaaattatgttgaagagaatgatattatccgcccagaagatttcgtagtg
aaatctacaggaagtaatagttcgctcaaattatacatcattcaaaacgtggatcgcaaa
cttgccttaccagacattgctaatgccaaaggccttgaaatgcgtgagtttataaaggaa
atggaagccattgtttacagcggcaccaagttgaatatagattattgggtggaagaagtt
ttagacgaagaccagcaggaagaaattcacgaatatttccttgaagccaaaactgatagc
attgaagaagccttagaagaatttgatggcgattatgacgaagaggaactgcgtttgtac
cgtattaaatttatcagcgaagttgggaattaa

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