Alligator sinensis (Chinese alligator): 102369243
Help
Entry
102369243 CDS
T02922
Symbol
PAN2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
asn
Alligator sinensis (Chinese alligator)
Pathway
asn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102369243 (PAN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asn03019
]
102369243 (PAN2)
Enzymes [BR:
asn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102369243 (PAN2)
Messenger RNA biogenesis [BR:
asn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102369243 (PAN2)
mRNA degradation factors
3'-5' decay
Pan complex
102369243 (PAN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_like
WD40_CDC20-Fz
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
102369243
NCBI-ProteinID:
XP_006035284
UniProt:
A0A1U7SGJ0
LinkDB
All DBs
Position
Unknown
AA seq
1197 aa
AA seq
DB search
MNFEGLDPSSLAEYASPLHPALEPVLDPHLPATLLQNVELDPDGVALDGMAVPESVHIME
GVYSELHTAVSEVGVPVSVAHFDLHEEMLWVGNHGGHATSFFGPTLERYSSFQVHGSDDV
RHIQSLENGILFLTKTNLKYMSRGGLIIFDYLMDESEDMHSLLLTDPSTLLVGGLQNHVI
EIDLNTVQETQKYTVEVPGVTIMRQSNRFFFCGHTSGKVSVRDPRTFTVEHELDAYSGSL
SDFDVHGNLLAACGFSSRRAGLACDRFLKVYDLRVMRAITPLQVHVDPAFLRFVPTYTSR
LAIISQTGQGQFCEPTGLANPADIFHVTTVGQLLMTFDVSGTKQALAFGDSEGCVHLWAD
SPEATFNAFSRETDFALPCIVDSLPHLDWGQDLVPLSLIPVPLTSETLLSDWPAANSVPA
PRRAPPVDPEILRTMKKVGFIGYAPNPRTKLRNQIPYRLKELDNEFDSFSQVPESPIGRE
EEPHLYMVAKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLE
PVRCLVQNHLCQKEFCLGCELGFLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILAD
SDEATGKVNLGRLIQSWNRFILTQLHQETQEQEGPQAYRGAGGSSFASAGESVIGQLFSC
EMENCSMCRCGKETVRVSSTLLFTLSYPDSTEKPIKDYEFVQILKRSICLEQSTQAWCEN
CEKYQPTVQTRNIRCLPDVLVINCEVNSSKEADFWKVQAEFAFQKALMKRGLEVPKGKDL
ALGDWKELGSAEPGQPYPSMEELKNVWIPHAIRMRLTKNKELDVCNWSESDEPSVSDDPD
SVHVYDLMATVVHILDSRTGGSLVGHIKVGETYHQRKEGVTHQQWYLFNDFLIEPVDKWE
AVQFDMSWKVPAVLYYARRNLNAKYNLTIKNPIEASVLLAEASLARKQRKCHATFIPLML
SEMPQAGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGVPFI
DDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDVGVKFVGHGLQ
KDFRVINLMVPKDQVIDTVYLFHIPRKRMISLRFLAWYFLDLKIQAETHDSIEDARTALQ
LYRKYLALSQGSAEPDEVRKVLKGLYEKGRKMDWKVPEPDGPGSPKHASVYPPVLAL
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgaaggcctggacccgtcgtcactggcggagtatgcctcccccctgcacccc
gccctggagcctgtgttggacccccacctgcccgccaccctgctgcagaatgtggagctg
gaccccgacggcgtggccctagacggcatggctgtgcctgagtcggtgcacatcatggag
ggtgtctactcggagctgcacactgccgtgtctgaggtgggcgtccccgtctctgtcgcc
cacttcgacctgcatgaggagatgctctgggtcggaaaccacgggggccatgccacctca
ttcttcgggcccacactggagcgatactcctccttccaagtgcacggcagtgatgacgtt
cgccacatccagagcctggagaatggcatcctcttcctcaccaagaccaacctcaagtac
atgtcccgaggtggcctcatcattttcgactacctcatggatgagagcgaggacatgcac
agcctcctgctgacggaccccagcacactgctggtcgggggcctgcagaaccatgtcatc
gagatcgatctcaacacggtccaggagactcagaagtacacggtggaggtgcccggcgtc
accatcatgcgccagtccaatcgcttcttcttttgcggacacacatcaggaaaggtgtca
gtgcgggacccacgcactttcacggtagagcacgagctggacgcctactcgggcagcctg
tcagacttcgacgtgcacgggaacctgctggcagcctgcgggttctcaagccgccgtgcg
gggctggcctgtgaccgcttcctcaaggtgtatgatctgcgtgtgatgcgggccatcacc
ccgctgcaggtgcacgtggaccccgccttcctgcgcttcgtccccacttacacctcccgc
ctcgccatcatctcccagactggccagggccagttctgcgagcccacgggcctggccaac
ccggctgacatcttccacgtcaccacggtgggacagctgctgatgacatttgacgtgtcg
ggcaccaagcaggcgctggccttcggtgactcagagggctgcgttcacctctgggctgac
tcgcccgaggccacattcaatgccttctcccgggagactgacttcgccctaccctgcatc
gtggactcactgccccacctcgactggggccaggacctcgtacccctctcgctcatcccc
gtgcccctcaccagcgagaccttgctgtccgactggcccgctgccaactcggtccctgcc
ccccggcgggcgccacccgtggaccccgagatcctgcgcaccatgaagaaggtgggcttc
attggctatgccccaaacccccgcaccaagcttcgcaaccagatcccgtaccggctcaag
gagctggacaacgagttcgacagcttcagccaagtgcctgagtcccccattggccgtgag
gaggagccacatctctacatggtggccaagaagtacaggaaggtcaccatcaagtactcg
aagctggggctggaggactttgacttcaagcactacaacaagacgctgttcgcggggctg
gaaccccatatccccaatgcctactgcaactgcatgatccaggtgctgtacttcctggag
cccgtgcgctgcctggtgcagaaccacctgtgccagaaggagttctgcctgggctgtgag
cttggcttcctcttccacatgctggacctctcccgtggggacccctgccagggcagcaac
ttcttgcgcgccttccgtaccatcccagaagcctcggcactgggcctgatcctggctgac
tcagatgaggccacagggaaggtgaacctaggccgcctgatccagagctggaaccgcttc
atcctcacacaactgcaccaagagacccaggagcaggaggggccacaggcctaccggggc
gctggtggcagcagcttcgcctcagctggggagtcggtcattgggcagctcttcagctgc
gagatggagaattgcagcatgtgccgctgtggcaaggagacagtgcgcgtgtcatccacc
ctgctcttcaccctctcctaccctgacagcactgagaagcccatcaaggactatgagttt
gtccagatcttgaagaggagcatctgcctggagcagagcacgcaggcctggtgtgagaac
tgcgagaagtaccagcccacagtccagacccggaatatccggtgcctgccggacgtcctg
gtcatcaactgtgaggtgaacagctccaaggaggctgacttctggaaggtgcaggctgag
tttgccttccagaaggcgctgatgaagcgaggcctggaggtgcccaagggcaaggacctg
gcactcggtgactggaaggagctaggcagtgccgagcccgggcagccctacccctccatg
gaggagctgaagaatgtgtggatcccccacgccatccgcatgcggctgaccaagaacaag
gagctggatgtctgcaactggagcgagagcgatgagccaagtgtgtcggatgaccccgac
tcggtgcacgtgtatgacctgatggccacggtggtgcacatcctggactcccgtactggc
ggcagcctcgtggggcacatcaaggttggggagacctaccaccagaggaaggagggcgta
acacatcagcagtggtacctcttcaatgacttcctcatcgagcctgtggacaagtgggag
gctgtgcagttcgacatgagctggaaggtgccggccgtgctatactacgcccggcgcaac
ctcaacgccaagtacaacctcaccatcaaaaacccgatcgaggccagtgtactcctggct
gaggcgtcactggcccgcaagcagcgcaagtgccacgccacctttatcccgctcatgctc
agtgagatgccccaggctggcgacctggtggggctggatgccgagttcgtcaccctcaac
gaggaggaggctgagctgcgcagtgacgggaccaagtccaccatcaagcccagccagatg
tcagtggcgcggatcacgtgtgtgcgcggccagggccccaacgagggcgtccccttcatc
gatgactatatctccacccaggagcaggtggtggattacctgacccagtactcagggatc
aagccaggggacctggacgccaagatttcctctaagcacctcacgacactcaagtcaacc
tacctgaagctgcgcttcctcatcgacgtgggggtcaagttcgtgggccacgggcttcag
aaggactttcgggtcatcaacctcatggtgcccaaggaccaggtgattgacacagtctac
ctgttccacatccccaggaagaggatgatctcactgcgcttccttgcctggtacttccta
gacctgaagatccaggcggagacgcatgacagcattgaggacgcgcgcacagcgctgcag
ctctaccgcaaatacctggcactgagccagggcagcgccgagcccgatgaggtgcgcaag
gtgctcaaggggctgtatgagaaaggccgcaagatggactggaaggtgcccgagcctgat
ggcccgggcagccccaaacatgcctctgtgtacccgcctgtgctggcgctctga
DBGET
integrated database retrieval system
