Agromyces soli: MTP13_12975
Help
Entry
MTP13_12975 CDS
T08198
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asoi
Agromyces soli
Pathway
asoi03030
DNA replication
asoi03410
Base excision repair
asoi03420
Nucleotide excision repair
asoi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MTP13_12975 (ligA)
03410 Base excision repair
MTP13_12975 (ligA)
03420 Nucleotide excision repair
MTP13_12975 (ligA)
03430 Mismatch repair
MTP13_12975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asoi03032
]
MTP13_12975 (ligA)
03400 DNA repair and recombination proteins [BR:
asoi03400
]
MTP13_12975 (ligA)
Enzymes [BR:
asoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MTP13_12975 (ligA)
DNA replication proteins [BR:
asoi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MTP13_12975 (ligA)
DNA repair and recombination proteins [BR:
asoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MTP13_12975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MTP13_12975 (ligA)
MMR (mismatch excision repair)
DNA ligase
MTP13_12975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MTP13_12975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
RNA_lig_T4_1
zf-TFIIB
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UOE27973
LinkDB
All DBs
Position
2710616..2712961
Genome browser
AA seq
781 aa
AA seq
DB search
MSFDEARAESERLAERIEAARLAYYGDGDSTLSDAEYDADFHRLEALERAFPELAGQDSP
TQQVGAAIVSAGFPEHEHAERMLSLDNVFSIEEFRDWAAKTQAAAGRPVHWLSELKIDGL
AISLAYRDGVLETATTRGDGRVGEDITENVDWIPVIPRTLSGEGFPAFFEVRGEVFLRTV
DFEALNERQHELQAAYEAEQLAKGRPADEIPTKYPEFANARNTAAGSLRQRREKKGPVEL
ELMRERLGRLSLYLHGIGAWQHPEVRAQSEIYGLLAGWGLPVSPHSRVFSSVDEVAEFIA
DRGEHRHDVEHEIDGIVVKVDELALHDELGATSRAPRWAIAYKYPPEEVHTRLLDIAVGV
GRTGRATPYAIMEPVKVAGSTVRQATLHNQQVVKAKGVLIGDTVVLRKAGDVIPEILGAV
EQLRDGTEREWQMPERCPECGTPLRPMKEGDIDLRCPNAKSCPAQVRGRIEHIGSRGGLD
IEALGEVTAAALTQPTVPAEPPLATEAGLFDLTLDELVPIEVVVRDAETGEVKIDEQTGE
PVRRLPFQKLGPASYPPGTEAMSPAERRAAGVRKDHREVGPSEAATKLLAELEKAKTKPL
WRLIVSLNIRHVGPVAARALAEWFGSLDAIRAADRAELAEVEGVGGIIADSLLEWFDVDW
HREIVDRWAAAGVQWSTPGHPGPGAAVAAGGVLAGLTVVATGSLEGFTREGAQEAIISAG
GKAASSVSKKTDYVAAGPGAGSKLAKAEELGIPVLDAEQFRLLVTEGPSALGDSIPGDAL
E
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgacgaggcgcgggcggagtccgagcggctggccgagcgcatcgaggctgcg
cgcctcgcctactacggcgacggcgactcgacgctctccgacgccgagtacgacgccgac
ttccatcgcctcgaggcgctcgaacgtgcgttccccgagctcgccgggcaagacagcccc
acgcagcaggtcggcgcggcgatcgtctcggcgggcttccccgagcacgagcacgccgag
cgcatgctgagcctcgacaacgtcttctcgatcgaggagttccgcgactgggcggcgaag
acccaggccgccgccgggcggccggtgcactggctgtccgagctcaagatcgacgggctc
gcgatcagcctcgcctatcgcgacggcgtgctcgagacggccaccacccggggcgacggg
cgggtcggcgaggacatcaccgagaacgtcgactggatcccggtgatcccgcgcacgctc
tcgggcgagggcttccccgccttcttcgaggtgcgcggcgaggtgttcctgcgcaccgtc
gacttcgaggcgctgaatgagcgccagcacgagctgcaggccgcctacgaggccgagcag
ctggcgaagggccgccccgctgacgagatccccaccaagtaccccgagttcgcgaacgcg
cgcaacaccgcggcgggcagcctgcggcagcgtcgcgagaagaagggcccggtcgagctc
gagctcatgcgcgaacggctcggccggctctccctgtacctgcacggcatcggcgcgtgg
cagcaccccgaggtgcgcgcgcagtccgagatctacggcctgctcgccggctggggcctg
ccggtctcgccgcactcccgggtgttctcgtcggtcgacgaggtcgccgaattcatcgcc
gaccgcggcgagcaccgccacgacgtcgagcacgagatcgacggcatcgtcgtgaaggtc
gacgagctcgcgctgcacgacgagctcggtgccacgagccgggcgccgcgctgggccatc
gcgtacaagtacccgcccgaggaggtgcacacgaggctcctcgacatcgccgtcggggtc
ggccgcaccggccgcgccaccccctacgcgatcatggagccggtcaaggtcgccggctcc
accgtgcgccaggcgacgctgcacaaccagcaggtcgtgaaggccaagggcgtgctcatc
ggcgacaccgtggtgctgcgcaaggccggcgacgtcatccccgagatcctcggtgcggtc
gagcagttgcgcgacggcaccgagcgcgagtggcagatgcccgagcgctgccccgagtgc
ggcacgccgctccggcccatgaaagagggcgacatcgacctgcgttgcccgaacgcgaag
tcctgcccggcgcaggtgcgcgggcgcatcgagcacatcggctcccgcggcggcctcgac
atcgaggcgctcggcgaggtgaccgccgcggcgctgacccagcccactgtgccggccgaa
cccccgctcgccaccgaggcgggactcttcgacctcaccctcgacgagctcgtgccgatc
gaggtcgtcgtacgcgacgccgagaccggcgaggtgaagatcgacgagcagacgggggaa
cccgtccggcgactgcccttccagaaactcggccccgcgagctacccgccgggcaccgag
gcgatgagccccgccgagcgccgcgccgccggcgtgcgcaaggaccaccgcgaggtcggc
ccctccgaggcggcgacgaagctgctcgccgagctcgagaaggccaagaccaagccgttg
tggcggctcatcgtctcgctcaacatccggcacgtcggcccggtcgccgcacgtgccctg
gccgagtggttcggttcgctcgacgcgatcagggccgccgatcgggccgagctcgccgag
gtcgagggagtcggcggcatcatcgccgactcgctcctcgaatggttcgacgtcgactgg
caccgcgagatcgtcgaccgctgggctgccgcgggcgtgcaatggtcgacgcccgggcac
cccggccccggggcggcggtcgccgcgggcggcgtactggccggtctgaccgtcgtcgcg
acgggcagcctggagggcttcacacgggagggcgcccaggaggccatcatctccgcgggt
ggaaaggccgcctcgagcgtctccaagaagaccgactacgtggccgcgggccccggtgcg
ggctccaagctcgccaaggcggaggagctcggcatccccgtcctcgacgccgagcagttc
cgactgctcgtgaccgagggcccgtccgcgctcggcgactcgatccccggcgacgcgctc
gaatag
DBGET
integrated database retrieval system
