Antennarius striatus (striated frogfish): 137612606
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Entry
137612606 CDS
T10427
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
astr Antennarius striatus (striated frogfish)
Pathway
astr03008
Ribosome biogenesis in eukaryotes
astr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
astr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
137612606 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
137612606 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
astr03019
]
137612606 (xrn1)
03009 Ribosome biogenesis [BR:
astr03009
]
137612606 (xrn1)
03016 Transfer RNA biogenesis [BR:
astr03016
]
137612606 (xrn1)
03036 Chromosome and associated proteins [BR:
astr03036
]
137612606 (xrn1)
Messenger RNA biogenesis [BR:
astr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
137612606 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
137612606 (xrn1)
Ribosome biogenesis [BR:
astr03009
]
Eukaryotic type
Pre-60S particles
RNases
137612606 (xrn1)
Transfer RNA biogenesis [BR:
astr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
137612606 (xrn1)
Chromosome and associated proteins [BR:
astr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
137612606 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
137612606
NCBI-ProteinID:
XP_068197322
LinkDB
All DBs
Position
18:complement(16161662..16180943)
Genome browser
AA seq
1714 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALDKGE
VLPTEARFDSNCITPGTDFMSRLQEQLKYFVHNKLSTDKLWQNVKVYLSGHETPGEGEHK
IMEFIRSENRRPGHNPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSELKEHIGSDYDLERIIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYKTYISVLPSVGGYLNENGHLNLPNFEKYLEKLAEFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEKEAVSKHTNTAEDSAVSLIDLASSEKGTKEGKGALADDEE
DEDDMFETEFRQYKRTYYMTKMGVDVVSDDFLAKQAKCYVEGIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIRNISGLKLTFDLEKPFMPFQQLLAVLPAASMELLPEAYRHLMTHENSP
IIEYYPLDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMEPCNNKLTKEEKARNCHTECAV
YSYDPETDFTYSSSLPQLFPDIIHCHVRKANIPVDAWHVSLEHISKPIDRSELYFCGFPT
LQHIKHKFYKKKSGVVVFQQSSRGENTILEILPSKEEPVCDDVAVQLLGKTAFVNWPHLE
EARIVAVSDGDVKFCVTEPPGVQQVYNRPSTPPPSKVTCLSDKEQKEWEKDVQGITEHFL
KRKGIVVKETAVLLYGQLKTGWKYVPKANGEVELQKQWAKQVLPFAYQTVVKDIKALYSS
LTCFKSLDELFPPKTTVFMVGNPCYGAMGEVQDSSDVIKDGRVRVIFNMLQEPQLETLIQ
NQHKYCVKYSPGYFLASRLGISSYLVSRFTGSIFIGRGSKKNPCGEQRVNIGLNLKFNKK
NEEVPGYTKRTEKEWLYSVVVEELLAEYLERFSEVFTAVARNSHDDVFYEDDIWPGLDQN
GAEKVAEITAWLKSHPVSSASRASCELQVLDTAIVEKIEEAVEKTKVRKGTKKVRVTVKP
HLLFRPLEQQQGVVPDPDAEYRLFDRVVNIRESYTVPLGLRGTIIGIKGADREAEILYEV
LFDEEFAGGLNIRCTSPRGYRLPPCALVNISHGARVDHTSHKLTAIVKPQPAAAANLNSQ
RQIGGLNHSPRSPFIPTQHNNKGVGKAASQGNRNSPNKTLIQKQAKSKEEHGDLWQSLQN
SGPPHQPPAHWHNDEKSSQQMGTQFSSKSAPAGSIRLLKKNEDINSILLSRSATDKASTD
YEDLMASLKISQGSNQTSTPPAPPPAPTSQSDGPLSPQSFAMKGTMVLKEMLKIDGAGTG
SPSLQEAGTSAATGGQQQSRRRSSKKLAANMNAPPHSDGASLAFPPSTSSSNPSSTVLPS
KVSDLGRVCIGLGMAAPEYTYISNRQGLVVCQVRLSNGLMVHGPQCQSENDAKEKAAFFA
LQRLSSVGSGFPLPPSLYPGMGQIPTAPIGAMAPVFNQQGGLLLPPQGYAPASLWGMTCL
PHHLQNQPFYGSSGTFPGAAHHQPASSLPIGSHNQFIPLQVTKKRASANKKNQETRQFYS
ASQTAARRQSQRAQNQPPGQSQTQSDEVDHPHQHASDSKPSSSSPTPATASTVKAAPIPH
PRQNTPSTAHTPGSASKKKHRKLAVNFETAKVSE
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccgaaattttaccgatggatatcggagcgttatccgtgtctcagtgaagtt
gtcaaggaacatcagattcctgaatttgacaacctgtatctggacatgaatggaatcatt
catcaatgttcccaccctaatgatgaggatgttcattttcgtatatctgaggaaaagatc
tttgcagatatcttccattacctggaggtgctcttcagaattatcaagcctcgcaaggtc
ttcttcatggctgtggacggtgtggcaccaagggcaaagatgaaccagcagagaggacgg
aggttcaggtctgccaaagaagcagaggaaaagataaaaaaagctctggataaaggagag
gtacttcccacagaggctcgctttgactccaattgcatcactcccggtactgacttcatg
tcaagactccaggagcaactgaaatattttgtccataacaagctctccactgacaaactg
tggcagaatgtcaaagtgtacctgtccggtcacgagactccaggggaaggagaacataag
atcatggaatttattcgctctgagaataggaggccaggtcacaacccaaacacgcgacac
tgcttgtacggcctggatgctgatctgataatgttgggtttaactagccatgagccgaac
ttctccttgctcagagaggaggtccgctttggaggaaagaaatcccagaaaaggataact
gccccagaggaaacaacctttcatttgctccatttgtctctgatgagggaatacattgac
tatgagttctctgagctcaaagaacacattggttctgactacgatttggagcgaataata
gatgattggattctaatgggcttcctggttggaaatgatttcatccctcaccttcctcat
cttcacattaatcatgatgctctaccgttgctgtataagacttacatcagtgttcttccc
agcgtgggaggttatctgaatgagaatggacatctaaatctcccaaactttgaaaaatac
cttgagaagcttgctgagtttgatcgagaacatttcagtgaggtgtttgtggacttgaag
tggtttgagagtaaagttggtaacaagtatctgaatgaggcagcaggactggcagcagaa
aaagaagcagtcagcaaacacaccaatacagcagaggactctgccgtctctctgatcgat
ctggcctcatcagaaaagggtactaaagaaggaaaaggagccctagctgatgacgaggaa
gacgaagatgacatgtttgaaaccgaattcaggcagtataagcgcacctactatatgacc
aagatgggtgtggatgtggtgtccgatgactttctggccaagcaggcaaagtgctatgtg
gaaggtattcagtggattctccactactattaccatggagttcagtcctggagctggtac
tacccctaccactacgctcccttcttgtctgacattcggaatatatcaggattaaagttg
acctttgaccttgagaaacccttcatgcccttccagcagcttttggccgtcctgcctgct
gccagcatggagctgcttcctgaggcttataggcacctgatgacacatgaaaactcgccc
attattgaatattaccctctagactttaagaccgacctcaatggcaaacaacaggaatgg
gaggcagtggttctcattcccttcatagatgagagatgcttactagctgccatggaaccc
tgtaataacaagctgacaaaagaagagaaggccaggaattgtcacacagagtgtgcagtt
tactcatacgaccctgaaacagacttcacctactcctccagcctgcctcagctgttccct
gacatcattcactgccatgtcaggaaagcaaacatccctgtagatgcctggcatgtttca
ctggagcacatcagcaaacctattgatcgatcagaactgtacttctgtggcttccctaca
ctgcaacacataaaacacaagttttataagaagaagagcggggtggtcgtgttccagcag
agcagcagaggggagaacaccatactggaaatccttcccagcaaagaagagccggtgtgc
gatgatgttgcggtacaattactgggcaagacagcatttgtgaactggccacatctagag
gaagctcgtatcgttgcagtttcggatggagatgttaagttttgtgtcacggaaccacct
ggtgtccaacaagtgtacaacagaccatccactcctccgccctccaaagtcacctgtctg
tctgacaaagagcagaaggaatgggagaaagacgtccagggaatcactgaacatttctta
aagaggaaaggcatcgttgtgaaggagacagcggtgcttctttatggccagttgaaaact
ggatggaagtatgttcctaaagccaatggggaggtggaactccagaaacagtgggccaag
caggtcctcccttttgcctaccagaccgttgttaaggacatcaaagccctttattcatct
ctgacttgtttcaagagcttagacgagctttttccaccaaaaacaactgtcttcatggtg
gggaatccctgctatggtgccatgggcgaggtgcaagattctagtgatgtcatcaaagac
ggccgagtacgagtgatcttcaacatgctgcaagaaccacagctggagaccttaatccag
aatcagcataaatattgtgtgaaatacagtcctggatattttctggcatctcgtcttggc
atcagtagctacctggtgtcccgcttcaccggaagcattttcattggaagaggctctaag
aagaatccatgtggggagcagagggtcaacattggtctgaatctgaagttcaacaaaaag
aacgaggaggttcctggatataccaagagaactgaaaaagagtggctctactctgtcgtt
gtggaggaattgcttgctgaataccttgaaagattttctgaggttttcaccgcagtggcc
aggaacagtcatgacgatgtattctatgaggatgacatctggcctggcttggaccagaat
ggggcggagaaggttgctgagatcacagcttggctgaagagtcacccagtgagctctgcc
agcagggcatcatgtgaactgcaggtgttggatacggcaattgtggagaaaattgaggag
gcagtggagaaaaccaaggtgaggaaaggcacgaagaaagtccgagtgacagtcaagcct
catcttctctttaggcccctggagcagcagcagggtgtggttccagatccggatgcagag
tatcgcctgtttgatagagttgtcaacatcagggagagctacaccgtccccctgggactc
agaggaacaatcattggcattaaaggagcggaccgtgaggctgagattctctacgaagtt
ctgtttgatgaggaatttgctggaggtctcaacatcaggtgtacatcacctcgtgggtac
cgcctccccccttgtgctctagtcaacatttcccatggtgcaagagtggatcacacatcc
cacaaactcacagctatcgtcaaacctcagcccgctgcagccgcaaacttgaactcacag
cgccagatcgggggcttgaatcactctccacgttcacccttcatacccacgcagcataac
aacaaaggtgtagggaaggcagcctcccaaggcaacaggaactcccccaataaaactctc
attcagaaacaggccaagagtaaagaggagcatggggacctctggcagtctctacagaac
tctggccctccacaccagcctcctgctcactggcataatgatgagaaatcatcccaacag
atggggacccagttctccagcaaatccgcccctgctggtagcatcagactgttgaagaaa
aacgaggacatcaactccattctgctgtcacggagcgccaccgataaggcttcgactgac
tatgaggacttaatggccagtctcaagatctcccagggtagcaatcagacctcaacccct
cctgctcctcctccagcacccaccagccaatcagacggcccgttgtctccacagtccttt
gccatgaaggggacaatggtactgaaggagatgcttaagattgatggcgctggaacagga
agtccctctttacaagaggcgggtaccagcgccgccactggtggccagcaacagagtagg
agaagatcatccaagaaactagctgcaaatatgaacgccccccctcacagtgatggagct
tcattagctttccccccatcgacctcatcatctaacccctccagtactgtgttgcccagt
aaggtgtcagatctcgggcgggtgtgcattgggttaggaatggcagcacccgagtacacc
tacataagcaacagacagggtctcgtggtgtgtcaggtgcggctgtccaatgggctgatg
gttcacggtccacagtgccaatcagaaaatgatgccaaggagaaagctgccttctttgct
ctccagagactgagctcagtgggatcaggcttccccctccccccttctctgtacccagga
atgggtcagataccaactgcacccattggagccatggcccctgtcttcaaccagcaaggt
ggtctcctgttgccacctcagggctacgcgcctgcctctctgtggggaatgacatgtctt
cctcaccacctccagaaccaacccttctacggatcatctggaacatttcctggcgctgcc
catcaccagccggcatcatcgctacccataggctcacacaaccagtttattccattgcag
gtgacgaagaagagagcatcggccaacaagaagaaccaggaaacacgacaattttacagc
gccagccaaactgcagccagacgccaatcacagcgagcccagaaccagccccctggccaa
tcacagactcaaagcgatgaggttgaccacccacaccaacacgcttcagacagcaagccg
tcctcatccagtcccactccagcaacagcttccactgtgaaggcagccccaatcccacac
cctcgacaaaacacaccttcaacagcacacacaccaggctccgcctccaagaagaaacac
aggaagttagccgtcaactttgagacagctaaagtgtccgagtga
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integrated database retrieval system
