KEGG   Atlantibacter subterraneus: NLZ15_20010
Entry
NLZ15_20010       CDS       T08300                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
asub  Atlantibacter subterraneus
Pathway
asub02024  Quorum sensing
asub03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:asub00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NLZ15_20010 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    NLZ15_20010 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:asub03019]
    NLZ15_20010 (hfq)
   03036 Chromosome and associated proteins [BR:asub03036]
    NLZ15_20010 (hfq)
Messenger RNA biogenesis [BR:asub03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     NLZ15_20010 (hfq)
Chromosome and associated proteins [BR:asub03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    NLZ15_20010 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: UTJ47078
LinkDB
Position
complement(4213592..4213900)
AA seq 102 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGSTGSNYHHSNAQGASAPQQDSDDAE
NT seq 309 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagatccgttcttgaacgcactgcgtcgcgaacgtgtt
ccagtttctatttatttggtgaatggtattaagctgcaagggcagattgagtctttcgat
cagttcgtgattttgttgaaaaacacggttagccagatggtgtataagcacgcaatctct
acggttgtgccgtctcgcccggtttctcatcacagcaacaacgccggtggcagtacgggt
agtaactaccaccacagtaatgcgcagggtgcatctgcaccacagcaagacagcgacgac
gccgaataa

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