Achromobacter spanius: CVS48_06275
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Entry
CVS48_06275 CDS
T05274
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
asw
Achromobacter spanius
Pathway
asw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CVS48_06275 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asw03021
]
CVS48_06275 (rpoB)
03400 DNA repair and recombination proteins [BR:
asw03400
]
CVS48_06275 (rpoB)
Enzymes [BR:
asw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CVS48_06275 (rpoB)
Transcription machinery [BR:
asw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CVS48_06275 (rpoB)
DNA repair and recombination proteins [BR:
asw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CVS48_06275 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
AUA55669
UniProt:
A0A0L0QYC0
LinkDB
All DBs
Position
1389704..1393816
Genome browser
AA seq
1370 aa
AA seq
DB search
MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTAPSDRVADGLQAAFSSI
FPIVSHNGMARLEFVSYVLGEPVFDVKECQQRGLTYASPLRAKVRLVLLDREVSKPTVKE
VKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILCKAIGMTPESILANFFDFDNFELKSEG
AMMEFVPERWKGEMARFDISDRDGKVIVEKDKRINAKHLRDLAAGGIQRISVPEDFLYGR
VLAKNIVDEDTGEVIANANDEITESVLGALRASNVYDIQTLYTNDLDRGPYISQTLRTDE
TADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGRGEDI
TGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKI
IDGRVSEQIDYLSAIEESHYVIAQANAALDEQGAFVDDLVACREAGETMLTSPANVHYMD
VAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPVVGTGIERTVAVDSGT
TVQALRGGLVDHVDAERVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKRG
DKVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSVHIE
ELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGITYIGAEVSADDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIIDDELR
RYRQDLNDQLRIVENDQFDRIEKMLVNKTVNGGPRKLAKGATITKAYLADLDRWQWFDIR
LADEPHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAA
KGVGHRIADLLRDERTAQVKNVRAYLDKVYNTTGSGARIDELTDEEVMEMAQNLKNGVPF
ATPVFDGATEEEITTMLELAYPDDVAERMALTPSRTQAWLFDGRTGEKFERPVTVGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT
VKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcgtacaccgaaaaaaagcgcatccgcaaaagcttcgccaagcgtgaagac
gttcaaaacgttcctttccttttggcgacacagcttcaatcctacctaactttcctgcag
gcggataccgccccgtccgatcgcgtagccgacggtttgcaggcggcgttctcgtcgatt
ttcccgatcgttagtcacaacggtatggcgcgcttggagttcgtgagctacgtgcttggc
gaaccggtgttcgatgtcaaggaatgtcagcaacgtggtctgacctatgcttcgcccctg
cgagccaaggtccgcctggtgctgcttgaccgcgaagtcagcaagccgaccgtgaaggaa
gtgaaggaacaggaagtctacatgggcgaaattccgctcatgacgggcacgggttccttt
gtcatcaatggcaccgagcgtgtcatcgtgtcgcagctgcaccgttcgcctggcgtgttc
ttcgaacacgaccgcggcaaaacgcacagctccggcaagctcctgttctcggcccgcgtg
attccttaccgcggctcgtggctggacttcgaattcgacccgaaggacgtcctgttcttc
cgcgtcgaccgccgtcgcaagatgcctgtcacgatcctgtgcaaggccatcggcatgacg
ccggaatccatcctggccaacttcttcgacttcgataacttcgaattgaagagcgaaggc
gcgatgatggaattcgtgcccgagcgttggaagggcgaaatggcccgcttcgacatctcg
gatcgcgatggcaaggtcatcgtcgaaaaagacaagcgcatcaatgccaagcatttgcgc
gacctggctgccggtggcatccagcgcatctccgtgccggaagatttcctgtacggccgc
gtgctggccaagaacatcgttgatgaagataccggcgaagtcatcgccaacgccaacgac
gagatcacggaaagcgtgctgggcgccctgcgcgcctcgaacgtctacgacatccagacg
ctctacacgaacgatctggaccgtggtccgtacatctcgcaaacgctgcgcaccgatgaa
accgccgaccagatggccgcgcgcgttgccatctaccgcatgatgcgtcctggcgagccg
cccaccgaagaagcggtggaagcgctgttccaacgtctgttctacagcgaagagacttac
gatctgtcgcgcgtgggccgcatgaaggtcaacagccgtctgggccgtggtgaagacatc
accggcccgatgacgctgaccaacgaagacatccttgaaaccatcaaggtgctggttgaa
ctgcgtaacggccgtggccagatcgatgacatcgatcacttgggcaaccgtcgcgtgcgt
tgtgttggcgaactggccgaaaaccagttccgcgccggcctggtgcgtgtcgagcgcgcg
gtcaaggaacgtctgggccaagccgagaccgaaaacctgatgccgcacgacctgatcaac
tccaagccgatctcggctgccatcaaggagttcttcggttcgagccagttgtcgcagttc
atggaccaaaccaacccgctgtcggaaatcacgcacaagcgtcgcgtttccgcactgggc
ccgggcggtctgacccgcgagcgcgccggctttgaagtccgcgacgtgcacccgacccac
tacggccgtgtctgcccgattgaaacgccggaaggcccgaacatcggtctgatcaactcc
atggcgctgtacgctcgcttgaacgagtacggcttcctggaaacgccttaccgcaagatt
atcgacggccgcgtcagcgagcagatcgattacctgtcggccatcgaagaaagccactac
gtcattgcacaggctaacgccgcgctggacgagcagggcgccttcgttgacgacctggtc
gcttgccgtgaagcaggcgaaacgatgctgacgtcgccggccaacgtgcattacatggac
gttgccccgtcgcagatcgtgtcggtggctgcttcgctgattccgttccttgagcacgac
gacgcgaaccgcgcactgatgggcgccaacatgcaacgtcaggccgtgccttgcctgcgt
ccggaaaagccggtcgtgggtacgggtatcgaacgcaccgtggccgttgactcgggcacg
accgtgcaagcactgcgtggcggcctggtcgaccacgttgatgccgagcgcgtcgtgatc
cgcgtgaacgacgaagaaaacgtcgccggcgaagtcggtgtcgatatctacaacctgatc
aagtacacccgttccaaccagaacacgaacatcaaccagcgtcctatcgtcaagcgtggc
gacaaggtcgccaagggcgacgtgctggccgacggcgcctcgaccgacctgggcgaactc
gccctgggtcagaacatgctgatcgcgttcatgccgtggaacggctacaacttcgaagac
tcgatcttgatctccgagaaggttgttgccgatgaccgctacacctcggttcacatcgag
gaactgacggttgtcgcccgcgacacgaagctcggtccggaagaaatcacgcgcgacatc
agcaacctggctgagacgcaactgaaccgtctggacgattcgggcatcacgtacatcggc
gccgaagtcagcgccgacgacgtgctggtcggcaaggtcacgccgaagggcgaaacccag
ctgacgccggaagaaaagctgctgcgcgccatcttcggtgaaaaggcgtccgacgttaag
gacacctcgctgcgcgtgccttcgggcatgaccggcaccgtgatcgacgtgcaagtgttc
acgcgtgaaggcatcgtgcgcgacaagcgcgcccagtccatcattgacgatgaactgcgc
cgctatcgccaagacctgaacgaccagctgcgcatcgttgaaaacgaccagttcgaccgt
atcgaaaagatgctggtcaacaagaccgtcaacggcggcccgcgcaagctggccaagggc
gccacgatcaccaaggcttacctggctgatctggaccgctggcagtggttcgacatccgt
ctggccgatgagccgcacgctgttgtgctggagcaagccaaggaatcgctggaacagaag
cgtcaccagtttgatctggccttcgaagagaagcgcaagaagctgacgcagggcgacgag
ctgcccccgggcgtgctgaagatgatcaaggtctacctggccgtgaagcgtcgtctgcaa
cctggcgacaagatggcaggccgtcacggtaacaagggcgtggtctcgcgtatcaccccg
gtggaagacatgccgcacatggctgacggcacgccggccgacatcgttctgaacccgctg
ggcgtgccttcgcggatgaacgtcggtcaggtgctggaagtgcacttgggctgggctgcc
aagggcgtgggccaccgcattgccgatctgctgcgcgacgagcgcactgcgcaggtcaag
aacgtccgtgcctacctggacaaggtctacaacacgaccggttccggcgcccgcatcgac
gagctgaccgacgaagaagtcatggaaatggcccagaacctcaagaacggcgtgccgttc
gcgacgcccgtcttcgacggcgcgaccgaagaggaaatcaccacgatgctggagctggcc
tatccggacgacgtcgccgagcgcatggcactgacgccttcgcgtacgcaggcatggctg
tttgacggccgcacgggcgagaaattcgaacgccccgtgactgtcggctacatgcactac
ctgaagctgcaccacttggtcgacgacaagatgcacgcgcgttcgacgggtccgtactcg
ctggtcacgcagcagccgctgggtggtaaggcgcagttcggtggtcagcgtttcggggaa
atggaagtgtgggcgctggaagcatacggcgccgcgtacaccctgcaagaaatgctgacg
gtgaagtcggacgacatcactggccgtacgaaggtatacgaaaacatcgtcaagggcgac
cacgtcatcgacgccggcatgccggaatcgttcaacgtgctggtgaaggaaatccgctcg
ttggccctggacatggatttggagcgtaactaa
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