Achromobacter spanius: CVS48_06280
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Entry
CVS48_06280 CDS
T05274
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
asw
Achromobacter spanius
Pathway
asw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CVS48_06280 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asw03021
]
CVS48_06280 (rpoC)
03400 DNA repair and recombination proteins [BR:
asw03400
]
CVS48_06280 (rpoC)
Enzymes [BR:
asw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CVS48_06280 (rpoC)
Transcription machinery [BR:
asw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CVS48_06280 (rpoC)
DNA repair and recombination proteins [BR:
asw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CVS48_06280 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AUA55670
LinkDB
All DBs
Position
1393816..1398060
Genome browser
AA seq
1414 aa
AA seq
DB search
MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSYGEVRKPETINYRTFKPERDGLFCSK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFRALM
GAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLKVLEGFQKSGIKAEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIILRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRERINGRGEGIFFTDVAEVQRAYDNG
EVELQSRVTVRLKEHERDEAGEWQPVIRRHETTVGRALLSEILPKGLPFTVLNKALKKKE
ISRLINQSFRRCGLRDTVIFADKLMQSGFKLATRGGISIAMGDMLIPTAKEGILAEASRE
VKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVGKAMMEQLATEPVVNRHGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTSLGYNMKALVEGGEVIEPLRDRIL
GRVAAVDIINPDTQETAIVAGTLLDEDLVDTIDRIGVDEVKVRTPLTCETRHGLCAHCYG
RDLGRGSPVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSALASAVETKSSGLVGF
ASTMRYVTNAKGERVAISRSGELAIFDDNGRERERHKIPYGATVLVGDGEAVKAGARLAT
WDPLTRPIVSEYGGAVRFENIEEGVTVAKQVDEVTGLSTLVVITPKTRGGKIVMRPQIKL
VNESGEDVKIAGTDHSVNISFPVGALITVRDGQQVAVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLADVTGTVSFGKDTKGKQRLVITDLEGVSHEFLIPKEKQVLVHDG
QVVNKGEMIVDGPADPHDILRLQGIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTEFIPGEQVERSELLNANDRMTAEERIPATYDNVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHHARRDKEELEAAERE
AARQQANPFEDSPVTVGADAEVPAADAGTENPAE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgacctatttaagcaagtctcgcaagacgagcaattcgatgccatc
aagatcggcatcgcctcgcccgagaagatccgttcgtggtcttacggcgaagttcgcaag
cccgagaccatcaactaccgcacgttcaagcctgaacgtgacggtctgttctgctccaag
atctttggcccgatcaaagactacgagtgcttgtgcggcaagtacaagcgcctgaagcat
cgtggcgtgatctgcgaaaagtgcggcgttgaagttaccgttgccaaggttcgccgtgaa
cgcatgggccacatcgagctggccagccccgtcgcgcacatctggttcctgaagagcctg
ccgtcgcgtctgggcatggtgctcgacatgaccctgcgcgacatcgaacgcgttctgtac
ttcgaagcctggtgcgtgatcgaacctggcatgacgccgctcaagcgcggccagatcatg
tcggatgacgatttcctcgccaagaccgaagagtacggcgacgatttccgtgccctgatg
ggcgcggaagccgtgcgcgaactgctgcgtaccatcgacatcgaccgcgaagtggaaacg
ctgcgcggcgaattgaaggccaccagctcggaagccaagatcaagaagatttccaagcgc
ctgaaggtgctggaaggcttccagaagtcgggcatcaaggccgagtggatggtcatggaa
gtgctgcccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcttgaag
cgtctgctggagctcaaggcgccggaaatcatcctgcgcaacgaaaagcggatgctgcag
gaagccgttgactcgctgctggacaacggccgccgtggcaaggccatgacgggcgccaac
aagcgccagctgaagtccctggccgacatgatcaagggcaagagcggtcgtttccgtcag
aacttgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggtccgcag
ctcaagctgcatcagtgcggtctgcccaagctgatggccctggaactgttcaagccgttc
atcttcaatcgtctggagatgatgggcctggccacgaccatcaaggccgccaagaagctg
gtggaaagccaggaaccggtggtctgggacatcctggaagaagtcatccgcgaacacccg
gtcatgctgaaccgtgcacctacgctgcaccgtttgggcatccaggcgtttgagccggtc
ctgatcgaaggcaaggccatccagctgcacccgctggtttgcgccgcgttcaacgccgac
ttcgacggtgaccagatggctgttcacgtgccgctgtcgctggaagcccagttggaagcg
cgcacgctgatgctggcgtcgaacaacgtgctgttcccggccaacggcgaaccgtcgatc
gtgccgtcccaggatatcgtgctgggtctgtactacacgacgcgcgagcgcatcaacggc
cgcggcgaaggcatcttcttcaccgacgtcgctgaagtgcaacgtgcgtacgacaacggc
gaagtcgagctgcaatcccgcgtgaccgtgcgtctgaaagagcacgagcgcgacgaggct
ggcgaatggcaaccggttatccgccgtcacgagacgacggtcggccgcgcgctgctgtcc
gaaattctgccgaagggcctgcccttcacggtgctgaacaaggcactgaagaagaaggaa
atctcgcgcctgatcaaccagtcgttccgccgttgcggcctgcgcgacacggtgatcttc
gccgacaagctgatgcagtccggcttcaagctggccacgcgcggcggtatctcgatcgcc
atgggcgacatgctgatcccgaccgccaaggaaggcatcctggctgaagccagccgcgaa
gtgaaggaaatcgacaagcagtactcgtcgggtctggtcacgtcccaagagcgctacaac
aacgttgtggacatctggggcaaggctggcgacaaggtcggcaaggcgatgatggaacaa
ctggccaccgagccggttgtgaaccgtcacggcgaagaagttcgccaggaatcgttcaac
tcgatctacatgatggctgactcgggcgctcgcggttcggccgcccagatccgtcagttg
gccggtatgcgcggcctgatggccaagccggacggctcgattatcgaaacgcccattacc
gcgaacttccgtgaaggtctgaacgtgcttcagtacttcatctcgactcacggcgcgcgt
aagggtctggccgatacggcactgaagaccgcaaactcgggttacctgactcgtcgtctg
gtcgacgtgacgcaagacttggtgatcaccgaggacgattgcggtacgtcgctgggctac
aacatgaaggccctggtggaaggtggtgaagtcatcgaaccgctgcgcgaccgcatcctg
ggtcgtgttgccgccgtggacatcatcaacccggacacgcaggaaacggccatcgtcgcc
ggtaccctgctggacgaagatctggtcgacaccatcgaccgcatcggcgtggacgaagtc
aaggtccgcaccccgctgacgtgcgaaacgcgtcacggtctgtgcgcacactgctacggc
cgcgatctgggccgcggttctccggtcaaccagggcgaagcagtgggcgttatcgctgct
cagtccatcggtgaaccgggcacgcagctcacgatgcgtacgttccacatcggtggcgcg
gcgtcgcgttctgctttggccagcgcggtggaaaccaagtccagcggtctggtcggtttt
gccagcacgatgcgctatgtcacgaacgccaagggcgaacgtgtggcgatttcgcgctct
ggcgaactggcgatcttcgacgacaacggccgcgaacgcgaacgccacaagatcccgtac
ggcgcgaccgtgctggtgggcgatggcgaagccgtgaaggctggcgcgcgtctggcgacg
tgggatccgctgacccgtccgatcgtgtcggaatacggtggcgccgtccgcttcgagaac
atcgaagaaggcgtgaccgttgccaagcaggtggacgaagtcaccggcctgtcgacgctc
gtcgtcatcacgcctaagacccgtggcggcaagatcgtcatgcgtccgcagatcaagctg
gtcaacgagagcggcgaagacgtcaagatcgccggcaccgatcactcggtgaacatctcg
ttcccggtgggcgcgctgattaccgtgcgcgacggccagcaggttgccgtgggtgaagtt
ctggcgcgtattccgcaagaatcgcaaaagacccgcgacattaccggcggtctgccgcgt
gtggccgagctgttcgaagcccgttcgccgaaggatgccggcatgctcgccgacgtcacc
ggtacggtgtcgttcggtaaggacacgaagggcaagcagcgtctggtcatcaccgacctg
gaaggcgtgagccacgagttcctgattccgaaggaaaagcaggttctggtgcacgacggc
caagtggtgaacaagggcgaaatgatcgtggacggcccggccgatccccacgacatcctg
cgcctgcaaggcatcgagaagctggcgacgtacatcgtcgacgaagtgcaggacgtgtac
cgtctgcagggcgtgaagatcaacgacaagcacattgaagtgattgttcgtcagatgctg
cgccgtgtgaacatcgttgacgctggcgataccgagttcatcccgggcgagcaagtcgag
cgctccgaactgctgaacgccaacgatcgtatgactgccgaagagcgtatcccggcaacc
tacgacaacgtgctgctgggtatcacgaaggcctcgctgtcgaccgactcgttcatctcg
gccgcctcgttccaggaaactactcgtgtcctgaccgaagccgccatcatgggcaagcgc
gacgacctgcgtggcttgaaggaaaacgtcattgtcggccgcctcatcccggcgggtacc
ggcttggcttaccaccacgcacgccgcgacaaggaagagctggaggctgcggaacgcgaa
gccgctcgccaacaggccaacccgttcgaagactcgccggtcacggtgggtgcggacgca
gaagtcccggccgccgacgccggcaccgagaaccccgccgaataa
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integrated database retrieval system
