Apodemus sylvaticus (European woodmouse): 127666637
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Entry
127666637 CDS
T10613
Symbol
Skic3
Name
(RefSeq) SKI3 subunit of superkiller complex protein
KO
K12600
superkiller protein 3
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127666637 (Skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127666637 (Skic3)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
127666637 (Skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_16
TPR_17
TPR_8
TPR_12
TPR_CcmH_CycH
TPR_11
TPR_9
ARM_TT21_C
ARM_TT21_2nd
ANAPC3
TPR_15
Sel1
Fis1_TPR_C
BTAD
SNAP
TPR_20
Clathrin
TPR_30
Retrotran_gag_2
Motif
Other DBs
NCBI-GeneID:
127666637
NCBI-ProteinID:
XP_052015568
LinkDB
All DBs
Position
16:complement(85711255..85820168)
Genome browser
AA seq
1562 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPEQLLAWQGLASLYEKCNHINAKDDLPGVYRKLLDLYESVDRQKWCDVCK
KLVDLYHQERRHLEVAQTWYRLIKTRQEDGADRQELYELWRKLSQLLAENIEDQNNETQQ
MLLTAFENALDLADNIPSEDHQVLYRNFIQCLSKFPHETNRLRKACEGMIAVYPTVQYPL
EVLCLYLIDSGSLTDEGHQYCCKLVEMNSKSGPGLIGLGITALQDKKYEDAISHLTEGLK
ESPLCIAGWCHLAEAQVKVHRPKEAILSCNQALKTMDNLGASGGSLHRKNLCLRLKAEAL
LKLSDGASSEEAVRTLAQVSDADNTPGLLVLQGLACLNIGAVDKATKIMEDLVTSYPDLA
EAHALEARVHFIKKDYVQAEMSFQRALEKDAEAAEYHYQLGLTYWFMGEETKRDRTKALT
HFLKAAKLDAHMGKVFCYLGHYYRDVAGDKQRARGCYRKAFELDDSDAASGAAAVDLSVE
LEDTDTALAILTAVTQKASAGAAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDSNC
WESLGEAYLSRGGYTTALKSFTRASELNPDSTYSVFKVAAIQQILGRYSEAIAQYQLILK
KKEDYVPALKGLGECHLMLGKAALVDFLDGKAVDYVGKALGYFTRALQLRADVSCLWKLV
GDACTCLHPVSPSKVHVHVSGALLGQQEGQEVLKKDELLHLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQHLAETGSSMNYTELLEKSLHCLKKAVRLDSHNHSHWNALGVVACYHGVG
NYALAQHCFIKSIQAEQTNAAAWTNLGVLYLATENIEQAHEAFKMAQSLDPSYLLCWIGQ
ALIAERVGSYDAMDLFRHTTELSMHTEGAIGYAYWVCTTLQDKTNRETELYQYNILQMNA
VPAAQGVLCKYVERIQNSAPAFTMLGYLNEHLQLKGEAAEAYRRAAALLHSVEDQHTYNA
TVRNWGRLLCSLGDYDRAIQAFKSTPLAELGDIIGFALALFMKGLFKESGSAYERALTVC
KSEQDRAHILTAIAITEYKQGKMDAAKSFLFKCSILKEPTAQSLQALCALGLAMQDATLS
KAALKELLKHIKHKNDYHRCLLTSAVYALQGQSVAVQRQVAKAVHSNPADPALWSLLSRI
VAQYTQQSAKGGAVAGSVAHILDLNHGKKALLYTAVNQLAIGSSTAEDESNTALKTIQKA
AFLSPDDPAVWAGLMAACYADDKLALVRNTQPKRIDLYLPLQSAVAASLKEKEILQNYNQ
LLEKWSFKQAVTGLIDTGKSSEAESLCTQNLKNNPDQPAVILLLRQVQCTSLLESQKPLP
DAVLEELQKTVMSNSSSVPAWQWLAQVYQSQGMMGAAEMCYRKSLQVASQQGNWSGKLSS
LLRLALLALEVCMANVSGDHWSSLVQEATSEALKVCFSPLAVFLQALLQFSHKMGARETR
RLLERVVYQTGYPSSIVSTARWYLLRHLYAKDDHELIDVLVRHAETHGDKRMLELHRKLS
AQ
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaagaagtgaagactgctctaaaaagtgcaagagatgcaatcagaaacaaa
gagtacaaagaagctttgaaacattgcaagacagtgttaaaacaagagaaaaataactat
aatgcctgggtttttattggtgttgctgcagcggagctagaacagcctgatcaggcccag
ggcgcctataagaaagcagcagagctcgagcccgagcagctccttgcttggcaggggcta
gcaagtttgtatgagaagtgtaatcacataaatgctaaggatgatttacctggtgtttac
cggaagctgttggatctctatgaaagtgttgacagacagaagtggtgtgacgtgtgtaag
aagctcgtggacctgtatcaccaggagaggagacacctggaggtggctcagacatggtat
agattgataaagacacggcaggaagacggagcagacagacaagagctttatgagctgtgg
agaaaattgagtcagttgctagctgaaaatatagaagatcagaataatgagacccagcag
atgctcttaactgcatttgagaatgcactggacctagcagataacattcccagtgaagat
caccaagtactttacaggaattttattcagtgtctgtctaaatttcctcatgagacgaat
aggttacggaaggcctgtgaagggatgatagctgtctaccctactgtgcagtacccactg
gaagtgctctgcttgtacttaattgactcagggagcctgacagatgagggacaccagtat
tgttgtaagctagtggaaatgaattcaaaaagtggtccaggtcttattggcttaggcatt
acagctttacaagacaagaagtatgaagatgctattagccatctaacagaaggcttgaag
gaaagccctctctgcatagctgggtggtgtcatctagcagaagcccaagtcaaagtgcac
agacctaaggaagctattctttcttgcaatcaagctctgaagaccatggataacctcggt
gcgtcaggcggcagtcttcaccggaagaatctttgtcttcgtctgaaagcagaagctttg
cttaaactctcagatggtgcgtcttcggaggaggcagttcgtacgcttgctcaggtttct
gatgcagataataccccaggactgctggttctccaaggcctggcctgtctcaacataggc
gctgtagacaaggctacaaagatcatggaagaccttgtaacctcgtaccctgatctagct
gaggctcacgctcttgaggctcgggtgcatttcattaagaaggactatgtgcaggcagaa
atgagtttccaaagagcccttgagaaagatgctgaagctgctgaatatcattaccagctt
ggattgacatactggttcatgggtgaagaaacaaaaagagacagaacgaaggctctcacc
cactttctgaaggctgcgaaactggatgcacacatgggtaaagttttctgctacctaggc
cattattaccgagatgtggctggagataaacagagagcccgagggtgttacaggaaagca
tttgaattagatgacagcgatgctgcctctggagctgctgcggtggatctcagcgtggag
cttgaagacacggacactgccttagccatcctgacagcagtaactcagaaggccagtgct
ggggcagccaagtgggcgtggctgaggagaggcctgtactatttgaaagctggtcaacat
tctcaagcagtggctgatttacaggcagcactgagggcagacccaaaggacagcaactgc
tgggagtcattgggagaagcgtacttaagcagaggtggctacacaacagccttgaagtct
ttcacgagagccagcgagctcaacccagactccacatacagtgtgtttaaggtggcagcg
atacagcagatcctgggaaggtactcggaggccattgcgcagtatcagctgatccttaaa
aagaaagaagattatgtacctgctttaaaaggtttgggcgagtgccacctgatgctgggg
aaggccgccttagtggactttctggacggaaaagcagtggactatgtgggaaaagcgctg
ggatatttcacccgggccctgcagcttcgagctgatgtgtcctgtctttggaagcttgtg
ggagatgcctgtacctgtctacatcctgtttcgccttctaaagtacatgttcatgtctca
ggagctcttcttggccagcaagaaggacaagaagtcttaaagaaagatgagctcctgcat
cttggaggaaggtgttatggtcgtgcattaaaattgatgtctacatctaatacatggtgt
gatcttggaattaattattaccgtcaggcacaacatctagcagaaacaggcagcagcatg
aattatactgagttactggagaaatctttgcattgtctgaaaaaggccgtgaggctggac
agtcacaatcactcacactggaacgcccttggtgtggttgcatgttaccatggagttgga
aattatgctcttgctcagcactgcttcatcaaatcaatccaggcagaacaaactaatgct
gctgcatggaccaacttaggagtgttataccttgcgactgaaaacatcgagcaagcccat
gaagcattcaaaatggctcagtcccttgatccatcttatttattgtgttggattggacag
gctcttatcgcagagagagttggaagttacgacgccatggatctcttcaggcacactacc
gagctcagcatgcacactgaaggagcaataggttatgcatattgggtttgtacaacatta
caagacaaaaccaacagagaaacagagctatatcagtacaacatcctccagatgaatgct
gtccctgcggcacaaggcgttctgtgtaaatatgtagaaagaattcagaattcggcccca
gctttcacaatgttgggttatctaaacgagcatctgcagttgaaaggcgaagcggctgag
gcttaccggagggcagctgcattgttacattctgtggaagaccaacatacttacaatgct
acagtaagaaactggggcagattgttatgctcccttggtgactatgacagagctatccag
gcctttaagtcgacaccccttgcagagctgggggacatcatcgggtttgcactagcattg
tttatgaagggcctgtttaaggagagcggctcagcctatgagagagccttgactgtatgt
aaatcagagcaagacagagctcacatcttgacagctattgcaataacggaatataaacag
gggaaaatggatgcagccaagtcattcctcttcaaatgctctattttaaaggaaccaact
gcacaaagtcttcaagcactatgtgctctagggttggcaatgcaggatgctacactgtcc
aaagcagcgctgaaggagttactgaagcatatcaaacacaaaaacgattatcacaggtgc
cttctaacatcagcagtttatgcactccagggccagagtgtggcagtgcaaagacaggtg
gccaaggctgtgcacagtaaccctgctgatcctgctctgtggtctttgctgtctcgaatt
gttgctcagtacactcagcagagtgcaaagggaggtgctgtggctggcagtgtggctcac
attctggacttgaatcacgggaagaaggcattattgtatactgcagtgaaccagttggcc
ataggaagcagtacagcagaagatgaaagcaatactgctctaaagaccattcagaaggca
gccttcctctctccagatgaccctgctgtctgggccgggctgatggctgcctgctatgca
gatgataaattggctttggtccgtaacactcagccaaagaggatagatttgtacttgcca
ttgcagtctgctgttgctgcttcacttaaggaaaaagaaattttgcaaaattacaaccag
ttgcttgaaaagtggtctttcaaacaagctgtcactggtttgattgacacaggaaaatca
tctgaagctgaatctctgtgcacacagaatttaaaaaataaccctgatcagccagctgtt
atcttactgttgagacaagttcagtgtacatcactcctggagtcacagaagcccctcccc
gatgctgtactggaagaactgcaaaaaacagtcatgtccaactcgtcctctgtcccagcg
tggcagtggttggcacaggtgtatcagtcccaaggaatgatgggtgctgcagagatgtgt
tacaggaagagtctccaagtggcctcccaacagggcaactggagcgggaagctctcgagt
ctattgaggctagcccttcttgcactggaagtgtgcatggctaatgtttcaggtgatcac
tggtcatccttggttcaggaagccacaagtgaggccttgaaggtttgcttcagtccgctg
gctgtcttcctgcaagcattgttacagttcagccataaaatgggagcaagagaaacacgg
aggcttttggagagagtagtgtaccagactggataccccagctcaattgtatcaactgct
cgttggtacctcctacgacacctctatgcaaaagatgaccatgaactaattgatgtgttg
gtgaggcatgctgagactcacggtgataaaagaatgttggagctgcaccggaagctgtca
gcacagtga
DBGET
integrated database retrieval system
