Apodemus sylvaticus (European woodmouse): 127685865
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Entry
127685865 CDS
T10613
Symbol
Snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127685865 (Snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asyl03041
]
127685865 (Snrnp200)
Enzymes [BR:
asyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127685865 (Snrnp200)
Spliceosome [BR:
asyl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
127685865 (Snrnp200)
Complex C
U5 SnRNP specific factors
127685865 (Snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
127685865
NCBI-ProteinID:
XP_052039491
LinkDB
All DBs
Position
5:110016384..110048495
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRREIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNVILSTPEKWDILSRRWK
QRKNVQNISLFVVDEAHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
GHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgactgcccgcagtttgcagtacgagtacaaggcgaactcaaatcttgtg
ctccaagctgaccgctctctcattgaccgtacccgccgggatgaaccgacgggagaggtt
ctgtccctggttgggaagttggagggaacccgaatgggagataaggctcaacggaccaaa
ccacagatgcaggaggaaagacgggccaagaggagaaaacgtgatgaggaccggcacgac
atcaacaagatgaaaggctatactctgctgtcggagggcattgatgaaatggtaggcatc
atctacaagcccaaaacgaaggagacccgggaaacctatgaggtgctgctcagcttcatc
caggctgctcttggggatcagcctcgagatattctttgtggagcagctgatgaagttctg
gctgtgctgaagaatgaaaagcttcgagacaaggagagaagaagggagattgacctgttg
ctgggtcagacagatgataccagataccatgtgttggtaaacttgggcaagaagatcaca
gactacggtggcgataaggagatacaaaatatggatgataacatcgatgagacttatggt
gtgaatgtacagtttgagtctgatgaggaggaaggtgatgaagatgtgtatggggaagtc
cgagaagaagcttctgatgatgacatggaaggggatgaagctgttgtgcgctgtacgctc
tctgctaatcttgtagcttcaggagaactgatgagttctaagaagaaggatttgcaccct
cgggatatcgatgcgttctggctgcagcgacagctcagtcgtttctatgatgatgccatt
gtgtcgcagaagaaggcagatgaagtgttggagattttgaagacagcaagtgatgaccga
gagtgtgagaaccaactggttctgctccttggtttcaacacttttgactttattaaagtg
ttgcggcagcaccggatgatgattttatactgtaccttgttggccagtgctcagagtgaa
gctgaaaaggagaggatcatgggaaagatggaagctgatccagagctttccaaattcctc
tatcagctccatgagactgagaaggaagacctgatcagagaagaaaggtcccgaagagag
agagtccgtcagtcccgaatggacactgatctggaaaccatggatttggaccaaggtgga
gaggctctggctccaaggcaggttctggatttggaggaccttgtttttacccaaggaagc
cacttcatggctaataagcgctgccagcttcctgacgggtccttccgacgccagcgtaag
ggctatgaagaggtgcatgtgcctgctttgaagcccaagccctttggctcagaagaacaa
ctgctcccagtggagaagctgccaaagtatgcgcaggcaggatttgagggcttcaaaacg
ctgaatcggatccagagtaagctctaccgtgctgccctggagacagatgagaatctgctg
ctgtgtgctcctactggtgctgggaagaccaatgtggctctgatgtgtatgctccgagag
atagggaaacacatcaacatggatggcactatcaatgtggatgatttcaagatcatctac
atagctcctatgcggtccctggtccaggagatggtgggcagttttggaaagcgcctagcc
acatatggcattactgttgctgagctgactggggatcaccagctatgcaaagaagaaatt
agtgccacacagattatcgtctgcactcccgagaagtgggacatcatcacacgcaagggc
ggggagcgcacctacacccagttggtgcggctcattgtcttggatgagatccatcttcta
catgatgacagaggtcctgtcttagaagctttggtggccagggccatccgaaacattgag
atgacccaagaagatgtccgactcattggtctcagtgctacgctccccaactatgaagat
gtggccacctttctgcgtgttgaccctgctaagggcctcttctactttgataacagcttc
cgcccagtgcctctggaacagacatatgtgggcatcacagagaagaaagctatcaaacgt
ttccagatcatgaatgaaatagtctatgagaaaatcatggaacatgctggaaaaaatcag
gtgctggtgtttgtccactctcgaaaagaaacggggaagacagcaagggcgatccgggac
atgtgtctggagaaggataccttgggtctgtttcttcgtgagggttctgcctctactgaa
gtccttcgtacagaagcagagcagtgcaagaacttggaactgaaggatcttctgccctat
ggctttgctattcatcatgcaggcatgactagagttgatcgaacactcgtagaagatctt
tttgctgacaaacatattcaggtcttagtttccactgcaactctggcttggggtgtaaat
cttcctgcacataccgtcatcattaaaggtacccaagtatacagtccagagaagggtcgt
tggacagagctgggagcactggatattctgcagatgctgggccgtgctggacggccccag
tatgacaccaagggtgaaggtatcctcatcacgtctcatggggagctccagtactacctc
tccctcctcaaccagcagctccctatcgagagccagatggtatcaaagctgcctgacatg
ctcaatgcggaaattgtgctggggaacgtccagaatgcaaaggatgcagtgaactggctg
ggctatgcctacctatacatccgaatgctccggtcccctaccctctatggcatttctcat
gatgacctcaagggagatcccttgctagaccagcgccgacttgatcttgttcacactgct
gccttgatgctggacaagaacaatctggtcaagtacgacaagaagacaggcaacttccag
gtgacagaacttggccggatagcaagtcactactatatcaccaatgacactgtgcagacc
tacaaccagctgctaaaacctactctgagtgagattgagctgttccgagtcttctccttg
tcctcagagttcaagaacatcactgtaagagaggaggagaagctagagctgcagaagctg
ctggagagagtgcccatccctgtgaaggagagcatcgaagaacccagtgcgaagatcaac
gtgcttctccaagccttcatctcacagctgaaactcgaaggctttgcgctgatggctgac
atggtgtacgtgacacagtctgctggccggttgatgcgtgcaatcttcgaaattgtcctg
aaccgaggttgggcacagcttacagataagaccctgaatctctgcaagatgattgacaag
cgcatgtggcagtccatgtgtcctcttcgccagttccgtaaacttcctgaggaagtagtg
aagaagattgagaagaaaaacttcccctttgagcggctgtatgacttgaatcataatgag
ataggtgagcttattcgaatgccaaagatggggaagaccatccacaagtatgtccatctt
ttccccaagttggagttgtcagtgcacctgcagcctattacacgctcgacgctgaaagta
gagctgactatcacgccagatttccagtgggatgaaaaggttcatggttcatcagaggca
ttttggattctggtggaggatgtggacagcgaggtgattctgcaccatgaatattttcta
ctgaaggccaagtatgcccaggatgagcacctcatcacgttctttgttccagtctttgaa
ccactacctcctcagtacttcattcgagtagtgtctgatcgctggctctcttgtgagacc
cagcttcctgtctccttccggcacctgatcctcccagagaagtacccacctccgactgaa
ctgttggacctgcagccattgcctgtatccgctctgaggaacagtgcttttgagagcctt
taccaagataaatttcctttcttcaatcccatccagactcaagtatttaataccgtgtac
aacagtgatgataacgtgtttgtgggggcccccacgggcagcgggaagactatctgtgca
gagtttgctatccttcggatgctgctgcagaattctgagggacgctgtgtctacattacc
cctatggaggctctggcagagcaggtgtacatggactggtatgagaagtttcaggacagg
ctcaacaagaaggtcgtcctgctgacaggggagaccagcacagacctgaagctcctgggc
aaaggcaacgtcatcctcagcacccctgagaagtgggacatcctctcccggaggtggaag
cagcgcaagaatgtccagaacatcagcctctttgtggtggacgaggcccaccttattggg
ggcgagaatgggcctgtcttggaagtgatctgctcccggatgcgctacatctcctcacag
attgagcggcccattcgcattgtggctcttagctcctccctctccaatgccaaggatgtg
gctcactggctgggctgcagtgccacctccaccttcaacttccaccctaatgtgcgccct
gtacctttggaactacacatccagggcttcaacatcagtcacacacagactcgcctgctc
tctatggccaagcccgtctaccatgctatcaccaaacactcacccaagaagcctgtcatc
gtttttgtcccatctcgcaagcagacccgcctcactgcaatagacatcctcactacctgt
gcagcggacatccagcggcagaggttcttgcactgtactgagaaggatctgattccttac
ctggagaaactgagtgacagcacactcaaagaaacactgttaaatggggtgggctaccta
catgaagggctgagccccatggagagacgcctggtagagcagctcttcagctcaggggct
atccaggtggtggtagcttctcggagtctctgctggggcatgaatgttgctgcccatctg
gtgatcattatggatactcagtactacaatggcaagatccacgcctatgtggattacccc
atctatgatgtgcttcagatggtgggccatgccaaccggcccctgcaggatgacgagggg
cgctgtgtcatcatgtgtcagggctctaaaaaggattttttcaaaaaatttttatatgag
ccattgccagtagagtctcacctggaccactgtatgcatgaccacttcaatgctgagatt
gtcactaagaccattgagaacaagcaggatgctgtggactacctcacctggacctttctg
tatcgccgaatgacacagaaccccaattactacaacctgcaggggatatcccatcgtcat
ttgtctgaccatttgtcagaactggtggagcagactctcagtgacctggagcagtccaag
tgcatcagtattgaggacgagatggatgtggcccctctgaacctgggcatgattgctgcc
tattattacataaactacaccaccattgagctcttcagcatgtctctgaatgctaaaacc
aaggttcgaggacttattgagattatttccaatgcagcagagtatgagaacattcctatc
aggcaccatgaagacaaccttctgcgccagttggctcagaaggtcccccacaagctgaat
aaccccaagttcaatgacccacatgtgaagaccaatctgctgctgcaggctcacctgtcc
cgcatgcagctgagtgctgagctacagtcagacacagaggagatccttagtaaggcaatc
cggctcattcaggcctgtgtggatgtactctctagcaatgggtggcttagccctgctcta
gcagccatggaactggctcagatggtcacccaagccatgtggtctaaggactcttacctg
aagcagctgccacacttcacctcagagcatatcaagcgttgcacagataagggagtggag
agtgtttttgacatcatggagatggaggatgaagaacggaatgcattgcttcagttgact
gacagccagattgcagatgtggcccgcttctgtaaccgatacccaaatattgagctgtcc
tatgaagtggtggataaagacagcatccgcagtggcggtccagttgtggtgctagtgcaa
ctggaacgagaggaggaagtcacgggccctgttattgcacctctcttcccacagaaacgt
gaagagggctggtgggttgtgattggagatgccaagtccaacagcctcatctccatcaag
aggctgaccctgcagcagaaagccaaggtgaagctagactttgtggccccagccacaggt
ggccacaactataccctgtacttcatgagtgacgcgtacatgggatgtgaccaggagtat
aaattcagtgtggatgtgaaagaagccgagacagacagtgattcagattga
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integrated database retrieval system
