Agrobacterium tumefaciens S33: AWN88_13825
Help
Entry
AWN88_13825 CDS
T04213
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ata
Agrobacterium tumefaciens S33
Pathway
ata03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AWN88_13825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ata03400
]
AWN88_13825
Enzymes [BR:
ata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWN88_13825
DNA repair and recombination proteins [BR:
ata03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AWN88_13825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
SecA_DEAD
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AMD59351
LinkDB
All DBs
Position
linear:complement(542987..546484)
Genome browser
AA seq
1165 aa
AA seq
DB search
MIAGFDAKLVSSADTPLTIGNVPAGMEALLLAEMARAGTSVAYVMSDGQRIADLEQILGF
VAPDIPVMTLPAWDCLPYDRVSPSADTSARRLAALASLISHAKKPHPAIVLVTVNAMLQK
MAPRDIIESLGFSARPGNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGT
EEPVRLDFFGDTLESIRTFDPASQRTIGQARSLDLNPMSEVTLTPDTISRFRKNYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYEKLETAFDYLKGFRIVTDHTAREAAKERSKL
VLDYYEARRASGETKGSTQGAPYKPVSPGQLYLNGKDFDTALSAVNAVRLTPFNEQDSEG
RPVATLDAHVGPRWARQPTEGESEERVNVFALAVKHIAERRAKGWKVLITGWSEGSLDRL
LQVLNEHGLEKIKPVTSLKEVEKLGKGEAASAVLSLEAGFETGNLAVIGEQDILGDRMVR
RSKRRKRGADFISEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYADDAKL
FLPVENIDLLSRYGSDAAEATLDKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHA
PELVAPDGLYDEFAARFPYDETEDQLNAIEAVREDLAAGRPMDRLICGDVGFGKTEVALR
AAFLAAMNGVQVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVA
DGKTDIVVGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIP
RTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLA
DLADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTA
NTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTTAERRLKVLQSLDTLG
AGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEQVQDSGWSPQ
ISVGTSVMIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKEVQHLLKI
VYIKSLCRIANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIGKQGSMAKIRPDHSLFLNR
DLPTPEKRLTGAAMIMTQLAELARS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgatagccggattcgatgcaaagctggtgtcgtcggccgatacgccgctgaccatcgga
aacgtgcccgccggcatggaggcgctgctgcttgccgagatggcgcgcgcaggcacctcg
gttgcctatgtgatgtcggatggccagcgcatcgccgatctcgaacaaattctcggcttt
gttgcgcccgatattccggtcatgacgctgccggcctgggactgccttccctatgaccgc
gtgtcaccaagcgccgacacgtcggcgcgtcgcctggccgcgcttgccagtctcatcagc
cacgcgaagaaaccgcatccggccatcgtgctggtcaccgtcaacgcgatgctgcagaag
atggccccgcgcgacatcatcgaaagccttggtttctctgccagacccggcaaccagatc
cgcatggaggatattgccgcgcggctggagcgcaacggtttcgaccgggttgcgacggtg
cgtgaggtgggcgagttcgccgtgcgcggcggtattctcgatgttttcgtgccgggcacc
gaggagcctgtgcggctcgatttcttcggcgatacgctggagagcatccgtaccttcgat
ccggccagccagcggaccatcggccaggcgcgctcgctcgatctgaaccccatgagcgaa
gtgacgctgacgcccgatacgatcagccggtttcgtaagaattacctctcgctgttcggt
gcggcgacgcgtgacgatgcgctttatcaggccgtttccgagggccgccgttatgccggc
atggagcactggctgccgctgttttacgagaagctggagaccgccttcgattatctgaag
gggttccgcatcgtcaccgatcacacggcacgcgaggcggccaaggagcgctccaagctg
gtgctcgattattacgaggcgcggcgggcttccggcgagacgaagggatcgacgcagggt
gcgccctacaagcccgtgtctcccggtcagctttatctcaacggcaaggatttcgacacg
gccctgtctgccgtcaatgcggtgcgtctgacgcccttcaatgagcaggatagcgagggg
agacccgtcgccacgctggacgcgcatgtcggcccgcgctgggcgcggcagccaaccgaa
ggcgaaagcgaagagcgggtcaatgtctttgccctggctgtgaaacacatagccgagcgc
cgcgccaagggctggaaggtgctgataacaggctggtcggaaggctcgctcgaccggttg
ctgcaggtgctgaacgaacacgggcttgagaagatcaagccggttacctcgctaaaagag
gtggagaagcttggcaaaggcgaggcggcctcggcggtgctgagccttgaagccggtttc
gaaaccggaaatcttgccgttatcggcgagcaggacattctcggcgaccgcatggtgcgg
cgttccaagcgtcgcaagcgcggtgcggatttcatttcggaagtggctggtctggacgag
ggctcgctcgtcgttcatgccgaacacggcattggtcgttttgtcggcctgcagaccatc
gaggcggcgggcgcaccgcgcgcctgtctcgaactgcactatgccgatgacgccaagctg
tttctgccggttgaaaacatcgatctcctctcgcggtacggctcggacgcggcggaggca
acgctcgacaagctcggcggcggcgcatggcagatgcgcaaggccaagctcaagaagcgc
ctgctcgacatggccgatgagcttatccgcatcgcagcggcgcgtctcgtgcgccatgcg
ccggagcttgtcgcgcccgatgggctctatgatgagtttgctgcccgtttcccctatgat
gaaaccgaggaccagctgaacgccatcgaggcggtgcgggaggatctcgcggccggccgg
ccgatggaccgtctcatctgcggcgacgttggcttcggcaagaccgaagtggcgctacgc
gccgccttccttgccgccatgaatggcgtgcaggtggcggtcgtggtgccgaccacgctg
ctcgcccgccagcatttccggactttctcggagcgtttccgcgggttgcccatccgcgtg
cagcaggcttcccgtctcgtcggctccaaggaactggcgctgaccaaaaaggaagtcgcc
gatggcaagaccgatatcgtcgtcggcacgcatgcgctgctcggtgcgggcatcagcttt
gccaatctcggcctgctcatcatcgatgaggagcagcatttcggcgtcaagcacaaggag
cggctgaaggagctgaaaagcgacgtgcacgtgctgacgctatcggcgacgcccattccg
cgcaccttgcagctcgccatgaccggggttcgcgaactgtcgctcatcaccaccccgcct
gtcgaccgcatggcggtgcgcactttcatctcgccgtttgacccgctcgtcattcgtgag
acgctgatgcgtgagcattatcgtggcggccagagtttctacgtttgtccgcggcttgcc
gatctcgccgatatccatgccttcctgcaatcggatgtgccggaactgaaggtggcggtg
gcgcatgggcagatggcggcgggcgagctggaagacatcatgaacgccttctacgacggc
aaatatgatgttctgctgtcgaccaccatcgtcgaatccggccttgacgttccaaccgcc
aatacgctgatcgtgcatcgcgccgatatgttcggtcttgcccagctttaccagctgcgt
ggccgtgtcggccgctccaaggtgcgcgccttcgcgctcttcaccctgccggtcaacaag
gtgctgaccacgactgccgagcgccggctgaaggtgctgcaatcgctcgatacgctcggc
gccggtttccagctggcgagccacgaccttgatattcgcggtgcgggcaatctgctcggg
gaagaacagtccggccatatcaaggaagtcggtttcgagctttatcagcagatgctggaa
gaggcggtggccgaagtgaagggtgacgagcaggtgcaggatagcggttggtcgccgcag
atttcggtcggcacatccgtcatgatcccggaagattacgttcccgatctgcatcttcgc
atgggcctttaccgccggcttggcgagcttgccgatatcagcgagatcgacggtttcggc
gctgaaatgatcgaccgtttcggcccgctgccgaaagaagtgcagcatcttctcaagatc
gtctacatcaagtcgctctgccgcattgccaatgtcgagaagctggatgccgggccgaag
ggcgttgtcgttcaattccgcaacaaggaattcccgaacccggcggcgcttgtcggttac
attggcaagcagggatcgatggcgaagatccgtccggatcacagcctgttcctcaaccgc
gatctgccgacgccggaaaagcggctgacgggtgcggcgatgatcatgacgcagctggcg
gagctggcgcggtcgtag
DBGET
integrated database retrieval system
