Agrobacterium tumefaciens S33: AWN88_14925
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Entry
AWN88_14925 CDS
T04213
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ata
Agrobacterium tumefaciens S33
Pathway
ata03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ata00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AWN88_14925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ata03021
]
AWN88_14925
03400 DNA repair and recombination proteins [BR:
ata03400
]
AWN88_14925
Enzymes [BR:
ata01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AWN88_14925
Transcription machinery [BR:
ata03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AWN88_14925
DNA repair and recombination proteins [BR:
ata03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AWN88_14925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AMD59555
UniProt:
A0A0X8IZK6
LinkDB
All DBs
Position
linear:complement(738731..742939)
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKQNQLLSEEEYMIAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRAELAETTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGHPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDIGELHHALE
NKVVTLHAKIRGRFKTVDADGKPVSKIHETTPGRMLIGELLPKNVNVPFDVCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPDSKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDPETGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVNSRDCGTDKGLTMTAIVDAGQVVASLGARILGRT
ALDDIDNPVTGENIVKAGTLIDEADVAAIEKAGIQSVRIRSALTCEVQVGVCGVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANVVDQSFLEASYEGTIQIKNRN
ILRNSEGVLIAMGRNMSVTILDERGAERSTQRVAYGSKIFVDDGDKVKRGQRLAEWDPYT
RPMMTEVEGTVHFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
AVAKLARGGEARFQLSVDAILSVEPGAKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSQYIVGDNVDRIELDDNNDRLIEEGKKPAYGEPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDDLILEERRK
GTGAGSANQMLQDMTDQAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatcctcaggtgcctgcgcagcatttcgattcc
atccggatttcgatcgcttcgccggaaaaaatcctgtcgtggtcctacggcgagatcaag
aagccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggtcttttctgcgcg
cgtatcttcgggccgatcaaggactatgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgcagcgccggttgcccacatctggttcctgaagtcg
cttccttcgcgtatctcgaccctgctcgacatgacgctgaaggatgttgagcgcgttctc
tatttcgagaactacattgtcacggaacccggtctcacctcgctcaagcagaaccagctt
ctgtctgaagaagagtacatgatcgccgtcgacgagttcggcgaagaccagttcaccgcc
atgatcggcgctgaagccatctatgagatgctggcttcgatgaacctcgaaaagatcgcc
ggcgacctgcgtgccgaacttgccgagaccacatccgatctcaagcagaagaagctgatg
aagcgcctgaagatcgtcgagaacttcatggaatcgggcaaccgtcctgaatggatgatc
atgaaggtcgttccggtcattccgccggacctgcgtccgctggttccgctggatggcggc
cgttttgcgacgtccgacctcaacgatctctatcgccgcgtcatcaaccgtaacaaccgt
ctgaagcgcctgatcgagcttcgtgcgcctggcatcatcatccgcaacgaaaagcgtatg
ttgcaggaatccgtcgatgcgctgttcgacaacggccgtcgcggtcgcgtcatcacgggt
gccaacaagcgcccgctgaagtcgctctccgacatgctcaagggcaagcagggccgtttc
cgccagaaccttctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggt
ccggaactgaagctgcaccagtgcggtctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctacgcccgcctcgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggttgaaaaggaaaagcctgaggtttgggatatcctcgacgaggtcatccgcgaa
catccggttctcttgaaccgcgcgccgacgctgcaccgtctgggtatccaggctttcgaa
cccatgctggtcgaaggcaaggccatccagctgcacccgctcgtctgcacggccttcaac
gccgacttcgacggtgaccagatggctgttcacgttccgctttcgctggaagcccagctg
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgcatccggcaaacggccacccg
atcatcgttccttcgcaggacatggttctcggcctgtattacctgtcgatcatgaaccag
aacgagccgggcgaaggcatggccttctccgacatcggtgagctgcatcacgcacttgaa
aacaaggtcgtgacgctgcatgccaagatccgtggtcgcttcaagaccgtggatgccgat
ggcaagccggtttcgaagatccatgagacgacccccggccgtatgctgattggcgaactt
ctgccgaagaacgtcaacgtgcctttcgacgtctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcattgcggccagaaagacacggtcatcttc
tgtgaccgcatcatgcagctcggctttgcccatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcattcctgacagcaaggtgaagatcgtcggcgacaccgaagctctc
gtgaaggaatacgaacagcagtataatgatggtctcatcacccagggcgaaaagtacaac
aaggttgtcgacgcctggggcaaggcaaccgaaaaggtcgccgaagagatgatggcacgc
atcaaggctgtcgagttcgatccggaaacgggccgccagaagccgatgaactccatctac
atgatgtctcactcgggtgctcgtggttctccgaaccagatgcgtcagctgggcggcatg
cgcggcctgatggcgaagccatcgggtgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgttaacgagtacttcaactcgacccacggtgcccgtaagggtctc
gcagacaccgccctgaagaccgcgaactcgggttacctgacccgtcgtctcgtcgacgtc
gcgcaggattgcatcgtcaactccagggattgcggcaccgacaagggcctcaccatgact
gccatcgttgatgccggtcaggtggttgcttcactcggcgcgcgtatcctcggtcgtacg
gctctcgatgacatcgacaaccccgtcaccggcgagaacatcgtcaaggctggcacgctg
atcgacgaagccgacgtggctgcaatcgagaaggctggcatccagtccgttcgcatccgc
tcggcgctcacctgcgaagtgcaggttggtgtctgcggcgtctgctacggtcgtgacctt
gcacgcggtacgcctgtcaacatgggcgaagccgttggcgttatcgccgctcagtcgatc
ggtgaacctggcacgcagctcaccatgcgtacgttccaccttggtggcacggcaaacgtg
gtcgaccagtcgttcctcgaagcgtcttatgaaggcacgatccagatcaagaaccgcaac
atcctgcggaactccgaaggcgttctcatcgccatgggccgtaacatgtccgttacgatc
ctcgatgagcgcggcgcggaacgttccacacagcgtgtggcttacggttcgaagatcttc
gttgatgatggcgacaaggtaaagcgtggccagcgtcttgcagagtgggacccctacacc
cgtccgatgatgacggaagtggaaggtaccgttcacttcgaagacctcgtcgacggtctc
tccgttctggaagcaaccgacgaatccaccggcatcaccaagcgtcaggtcattgactgg
cgctcgacgccgcgcggttcggatctcaagcctgcgatcgtcatcaaggacgcgtccggc
gctgttgcgaagcttgcccgtggtggcgaagcccgcttccagctctcggtcgacgccatc
ctgtcggtcgagccgggtgcgaaggtctcccagggtgacgtgcttgcacgttcgccgctg
gaaagcgccaagacgaaggacatcaccggtggtctgccgcgcgttgcggaactgttcgaa
gcccgtcgtccgaaggatcacgccatcatcgcagagatcgatggtacgatccgcctcggc
cgcgactacaagaacaagcgccgcgtgatgatcgagcctgcggaagacggcgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggaaggcgactatatcgaa
aagggtgaatacatcctcgacggtaacccggcgccgcacgacattctggcgatcaagggc
gtggaagctctggcttcctacctcgtgaacgaaatccaggaagtctaccgtctgcagggc
gttgtgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggttgaa
atcaccgatgctggcgatagccagtacatcgtgggtgacaacgttgatcgcatcgagctc
gatgacaacaacgaccgcctgatcgaagaaggcaagaagcctgcctacggcgagccggtt
ctgctcggcatcaccaaggcttcgctgcagacgccgtccttcatctcggccgcatccttc
caggaaaccaccaaggttctcacggaagctgcgattgccggcaagacggacacgctgcag
ggtctcaaggaaaacgtcatcgtcggccgtctcatcccggccggtaccggcggtaccatg
acgcagatccgccgcatcgccacctcgcgcgacgacctcattctcgaggaacgccgcaag
ggtaccggtgcaggttctgcaaaccagatgctgcaggacatgacggaccaggctccggct
gccgagtaa
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integrated database retrieval system
