Agrobacterium tumefaciens S33: AWN88_25220
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Entry
AWN88_25220 CDS
T04213
Name
(GenBank) excinuclease ABC subunit C
KO
K03703
excinuclease ABC subunit C
Organism
ata
Agrobacterium tumefaciens S33
Pathway
ata03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AWN88_25220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ata03400
]
AWN88_25220
DNA repair and recombination proteins [BR:
ata03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AWN88_25220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
GIY-YIG
UVR
HHH_5
HHH_2
HHH
Motif
Other DBs
NCBI-ProteinID:
AMD61368
LinkDB
All DBs
Position
linear:complement(2889067..2891112)
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AA seq
681 aa
AA seq
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MNGKKLPDGGILFDDTDDEDDDASLAATETAEAPRDVAGMDWNAGWKNESGLKGMDLIGE
FVKHLPNAPGVYRMFNEAGDVLYVGKARSLKKRVGNYAQGRVHSNRIAQMVRHTTHMEFV
TTRTETEALLLEANLIKRLRPRFNVLLRDDKSFPYILITADNRAPAIFKHRGARARKGDY
FGPFASAGAVGRTINSLQRAFLIRTCTDSVFETRTRPCLLYQIKRCSGPCTHEISDEGYA
ELVKEAKDFLSGKSQSVKTAIARQMNEASEDLDFERAAIYRDRLAALSHVQSHQGINPAG
IEEADVFAIHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSLPGSEILNAFLAQFYDDKP
VPKQILLSETVEEQELLAAALGEKAGHKVTISVPQRGEKKDITDHVLANAREAHGRKLAE
TSSQARLLKGFAETFGLAYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVKNQYRKFNIK
STDITPGDDFGMMREVMTRRFSRLLKEEGKPDRERIPTAEEAADMPFPAWPDVILIDGGQ
GQMTAVRAILDELGIRDCVTAIGVAKGTDREAGRERFFADGRSDFSLPPRDPVLYFIQRM
RDEAHRFAIGSHRARRKKEMVRNPLDEISGIGPGRKRSLLQHFGTAKAVSRAGLNDLMAV
TGISETVARQIYNHFHESGSD
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgaacggaaagaagctgcctgatggcggtattctcttcgatgacaccgacgacgaagat
gacgatgcaagccttgccgcaacggaaacggccgaggctccgcgcgacgtcgccggcatg
gactggaatgcgggatggaagaacgaatccggcctgaagggcatggacctcattggcgaa
ttcgtcaaacacctgcccaatgcgccgggtgtctatcgcatgttcaacgaggcgggcgac
gtgctttacgtcggcaaggcacgctcgttgaagaagcgcgtcggcaattatgcgcagggc
cgcgtgcattccaaccgcatcgcccaaatggtgcgtcacaccacgcacatggaattcgtc
accacccgcacggagaccgaagcgcttcttctggaagcgaatctaatcaagcgcttgcgg
ccgcgatttaacgtacttctgcgcgacgacaagtccttcccctatattctcatcaccgcc
gacaaccgtgccccagcgatcttcaagcaccggggagcaagggcgcgcaagggcgactat
ttcggacccttcgcgtccgccggcgcggttggccgcacgatcaattcgctgcagcgcgcc
ttcctgatacgcacctgcacagacagtgtgttcgaaacccgcacccgtccctgtcttctg
taccagatcaagcgctgttccgggccctgtacgcatgagatcagcgacgagggctacgcg
gagctggtcaaggaagccaaggatttcctgtccggcaagagccagagcgtcaagaccgca
attgcgcgacaaatgaacgaggcttccgaagacctcgatttcgagcgcgccgccatctat
cgcgaccggctggcggcactttcgcacgtccaaagccaccagggcatcaaccccgccggc
attgaagaggcggatgtcttcgccatccaccacgaaggcggcatttcctgcattcaggtg
ttctttttccgcaccggccagaactggggcaaccgcgcctatttccccaaggccgatccg
tccctgcccggctcggaaattctcaacgcgtttctggcgcagttctacgacgacaagccg
gtgccgaaacagatcctgctttccgaaacggtggaggaacaggaactgctggcggccgcc
ctcggggagaaagccgggcacaaggtcacgatcagcgtgccgcagcgcggcgagaagaag
gacattaccgatcacgtgcttgccaacgcccgcgaggcgcacggccgcaagctcgcggaa
acatcgtctcaggcgcggctgctgaagggctttgccgagactttcggccttgcctacgtg
cctcggcggatcgaaatctacgataactcgcacatcatgggcaccaatgcggtcggcggc
atggtggtggcggggccggaaggtttcgtgaagaaccagtatcgcaagttcaatatcaaa
tcgaccgacatcacgccgggcgacgatttcggcatgatgcgggaggtgatgacccgccgc
ttctcacgcctcctgaaagaagaaggaaagccggatcgcgagcgcataccgacagcagaa
gaagctgccgacatgcccttccccgcctggccggacgtgatcctgatcgatggtggtcag
gggcagatgacggcggtgcgggccatcctcgacgaactcggcattcgcgactgcgtgacc
gccatcggcgtcgccaaaggcacggaccgcgaggcgggccgtgaacgtttcttcgcggac
gggcgcagcgatttttccctgccgccacgtgatcccgtgctctacttcattcagcgcatg
cgtgacgaggcgcaccgtttcgcgatcggatcgcaccgggcccggcgcaagaaggaaatg
gtgcgcaatccgctggacgaaatctcgggaatcggaccggggcgcaaacgttcgttgctg
cagcattttggaaccgccaaggcggtttcccgcgcgggcctcaatgacctgatggccgtc
accggcatttccgagacggtggcgcggcaaatttacaatcacttccacgagagcggcagc
gattga
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