KEGG   Aethina tumida (small hive beetle): 109609178
Entry
109609178         CDS       T06105                                 
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
  KO
K08131  collagen type IX alpha
Organism
atd  Aethina tumida (small hive beetle)
Pathway
atd04512  ECM-receptor interaction
atd04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:atd00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    109609178
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109609178
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:atd00535]
    109609178
Proteoglycans [BR:atd00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   109609178
SSDB
Motif
Pfam: Collagen Laminin_G_2 Laminin_G_1 Rhamno_transf
Other DBs
NCBI-GeneID: 109609178
NCBI-ProteinID: XP_049826451
LinkDB
Position
1:complement(join(44486358..44486560,44486619..44486786,44487253..44487354,44487993..44488047,44490014..44490160,44490216..44490401,44490449..44490619,44490674..44490934,44490990..44491141,44491195..44491360,44491419..44491580,44491636..44491806,44491861..44491968,44492222..44492356,44492691..44492807,44492864..44492935,44493406..44493576,44493755..44493971,44494066..44494270,44494589..44494647,44496148..44496170))
AA seq 1016 aa
MLVLQLDRWIPYIWVILSLQLAKTIRAQLSLIEEQSAPCADFRIGDDDLQAYDFIRQFRL
DLLETQYPGVSRVKGSNRMQTAYRLDKDADLTLPTRDIFPLGLPEQFSFICTFRTRRVPK
NTWHIIRVTDLESKPQFLISLNPINRTIEFAVSNYEGRLQKLEFHNTNVFDKNWHKIHFG
VTREKVMLYVDCEEKSELLLEPRGPIDLNGEIAVSKFANTKETVPIDLQWMVMSCDPTRP
ERESCLELPKIKPLEEPRPQIRPPVTTRRPETCDVICPQGPPGFNGTDGLPGLPGLPGPV
GPMGLIGPPGAPGLRGLQGPRGNLGFPGVKGEVGSPGLQGMPGIKGAQGSPGFPGTPGRD
GLPGAKGSKGDSGVAGPKGERGTDGLPGIPGIEGPPGPRGPPGEVITKTGVAVQGPQGPP
GPRGPAGPPGLDGAIGPRGFPGEEGAPGRNGIDGRPGAKGSKGDRGDAGEKGERGYPGEA
GPPGLPGTQVAGDSSPGLPGLPGQKGEPGMPGLPGLQGIKGEPGDRGEEGGKGETGDRGS
PGVPGQDGARGPPGKDGLPGAEGAMGQRGYPGPPGNQGPMGLIGLPGPSGPQGLPGTPGE
KGERGTPGLPGLPGSSLGAGERGPAGPQGLPGPAGNDGEKGERGFPGLPGPPGIVGPPGP
QGPEGVPGKDGPQGLPGQRGEPGPRGFEGQPGPAGRDGATGLTGKAGEKGDRGDQGLQGP
VGPRGLPGHMGPSGLPGSPGVPGIPGNEGKQGLPGPPGPPGPPGEVASNLIVDSGYAAGV
HGPRGFPGSPGMPGERGASGERGPEGPAGQPGVPGKEGPPGLPGPPGQRGQPGIPGTQGP
PGRSYTDSEIRDICAAVLRDQLSELSATLVGPPGPPGRSKPGRPGPPGVQGPPGDPGYPG
LPGERGFMGLPGPAGPPGSIGISGEKGEKGDRGQEGVGIEGPPGPRGLPGPPGPPGEGIP
GRAGDRGETGSPGAPGLRGSPGPQGPPGYCEFCNYAAAAQSYQTQYMRTQGNNKGP
NT seq 3051 nt   +upstreamnt  +downstreamnt
atgttggtgttacaactggatagatggataccatacatatgggttattttaagtttgcaa
ttagctaaaacaattagggcacaattaagcttaatagaagaacaaagcgccccttgcgca
gattttagaataggtgatgatgatctccaagcttacgattttattaggcagtttagattg
gaccttctagaaacacaatatcctggtgtttcaagggtaaagggttcaaatcggatgcaa
actgcctaccggcttgacaaggatgcagatttaacgctacctacaagagacatatttcca
ctgggattgccggaacagttctcgttcatctgcacattccgaactaggagggtacccaaa
aatacctggcacattatcagagtaacagacttagaatcaaaaccccaattcttaatttca
ctgaatcccattaatcgaaccatcgaattcgcagtttccaattacgagggacgacttcaa
aaactggaatttcacaatacaaacgttttcgataaaaactggcataagatccatttcggc
gtgaccagagagaaggtcatgctgtacgtggattgcgaagaaaagtctgaacttctactg
gaaccaaggggaccaattgatctgaacggtgaaattgcagtttcgaaattcgccaacacc
aaagagactgtgccgatcgacctccaatggatggtaatgagttgcgacccaacaagacca
gagagggaatcatgtctggaattaccgaaaattaaaccactcgaagaacctagaccacaa
atacgacctccagtgaccactcgtcgaccagaaacgtgtgacgttatttgccctcagggt
ccacctggatttaatggtacagacggtttaccaggtttacccggcctcccggggcctgtt
ggtccgatgggtttgattggtccgccaggtgcccctggtttgcgaggtttacaaggtccg
agagggaatttgggatttcctggagttaaaggcgaagtaggttcacccggtttgcaagga
atgccgggaataaaaggagctcaaggttcgcctggatttccaggaactcctggtcgagac
ggtttgccgggcgcaaaaggatcaaagggtgatagtggcgtcgctggaccaaaaggtgaa
aggggaaccgatggtctacctggtattcccggtatcgaaggacctcccggtcctaggggg
cctcctggagaagttataacaaaaactggtgtggcagttcaaggaccacaaggtccccca
ggaccaagagggccagctgggccacctggtttggatggtgcaattggtccaagaggtttt
ccaggagaagagggtgctccaggtcgtaatggtatagacggacgaccaggtgcaaaaggc
agcaagggagaccgcggtgatgcaggtgaaaagggagaaagaggatatcctggagaagct
ggcccaccaggactaccaggaacacaagttgcgggtgattccagtccgggcctacctggt
ttgcccggacaaaaaggagaacctggtatgcctggacttcctggtctgcaaggtattaag
ggtgaaccaggagatagaggtgaagaaggtggaaagggagaaacgggtgatcgtggttca
cctggcgttcccggacaggatggtgcaagaggtcctccgggcaaagatggtttacctggt
gctgaaggtgcaatgggacaaagaggttatccaggtccacctgggaatcaaggaccaatg
ggtcttataggactaccaggtccgtccggtcctcaaggtttaccaggaactcctggtgag
aaaggtgaaagaggcactccaggattgccgggattaccgggatcgtcacttggtgccgga
gagagaggccctgcaggtccacaaggactgccagggccagctggtaatgatggtgaaaag
ggtgaaagaggtttcccaggtcttccaggtcctcctggtattgttgggcctccaggacct
caaggaccagaaggtgtaccaggaaaagatggacctcaaggcttgccaggtcaaagaggt
gaaccaggtcccagaggctttgaaggacaacctggtcctgcaggaagggatggtgcaact
ggtcttacaggaaaggctggcgagaaaggtgatcgcggggatcaaggacttcaaggacct
gtaggaccaagaggtctacctggacatatgggtcccagcggactgcctggatctccaggc
gttccaggaattcctggaaatgagggaaaacaaggtcttccaggtcctccaggaccacct
ggtccgccaggggaagtagcgtccaacttaatcgtagatagcggatacgctgcaggagta
cacggacctagaggttttccaggaagtccaggaatgcctggtgaaagaggagcaagtgga
gagcggggccctgaagggcctgcagggcaacctggcgtaccaggcaaagaaggaccgcca
ggtttaccggggcctccaggacaaagaggacagccaggaataccaggcacacaaggacct
cccggaagatcgtatacggactcggaaattagggacatatgtgcagctgtcttaagagat
caactgtctgagttgtcggcaacgttggtgggtccacctggccctccaggccgttcaaag
cctggcaggcccggacctccaggtgtccaaggaccaccaggcgacccgggatacccaggt
ttaccgggtgaaagaggttttatgggactaccgggaccggcaggtcctcctggttccatc
ggcatatcgggcgagaaaggtgaaaaaggagatagaggtcaagagggtgttggaattgaa
ggtccaccgggtcctaggggattaccagggccaccgggtccgccaggtgaaggaattcct
ggaagagctggcgacagaggcgaaactggaagtcccggagcaccgggcttgagaggctca
ccaggaccacaaggacctcctggttattgtgaattctgcaattacgcggcagccgcgcag
agctatcagacgcaatatatgagaactcaaggaaataataagggaccataa

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