Agrobacterium tumefaciens Ach5: Ach5_18640
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Entry
Ach5_18640 CDS
T03816
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
atf
Agrobacterium tumefaciens Ach5
Pathway
atf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
atf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ach5_18640 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atf03021
]
Ach5_18640 (rpoB)
03400 DNA repair and recombination proteins [BR:
atf03400
]
Ach5_18640 (rpoB)
Enzymes [BR:
atf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ach5_18640 (rpoB)
Transcription machinery [BR:
atf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ach5_18640 (rpoB)
DNA repair and recombination proteins [BR:
atf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ach5_18640 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
AKC07640
UniProt:
T2KRZ2
LinkDB
All DBs
Position
circular:complement(1901319..1905455)
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFK
SVFPITDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLLMALGMDGEEILSTFYSKASYER
AGDGWRIPFQPETLKNAKVITDMIDADTGEVVVEGGKKLTPRLIRQLVDKGLKALKATDE
DLYGNFLAEDIVNYSTGEIYLEAGDEIDEKTLGLILQSGFDEIPVLNIDHVNVGAYIRNT
LHADKNQNRQEALFDIYRVMRPGEPPTMDSAEAMFNSLFFDAERYDLSAVGRVKMNMRLD
LDAEDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIIDGKVTTDVIYLSAMEEAKYYVAQANAELDGEGAFTEEFVVCRHSGEVMLAPRDNI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVAR
DSGAAIAARRGGVVDQVDATRIVIRATEELDAGKSGVDIYRLQKFQRSNQNTCVNQRPLV
AVGDIISKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLIDMLRGHVSIAGPKGFKKGVELSNAVVSEYPRSQWW
MFAVEDEKAQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLA
WACAGMGKKIGEMLEEYRKTMDISELRTELTEIYASESHDEVKRFDDESLVKLAEEAKRG
VSIATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVGYMYMIKLNHLV
DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA
GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKVETQPEDQLPDAAE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgtttaacggtcgcaggcgcgtacgcaagtttttcggcaaaatt
ccagaagtagcggaaatgccgaacctcatcgaggttcagaaggcttcgtatgaccagttt
ctcatggttgacgagcccaagggtggccgtcccgacgagggattgaatgccgtattcaaa
tccgtattcccgatcaccgatttttccggcgcatccatgctcgaattcgtgtcttacgaa
ttcgaagcgccgaagtttgacgtcgaggaatgccgtcagcgcgatctgacctatgcagcg
ccgctgaaagtgacgctgcgcctcatcgtgttcgatatcgacgaggatacaggcgcgaag
tccatcaaggacatcaaggaacagtccgtatacatgggcgacatgccgctcatgaccaat
aacggcacgttcatcgtcaacggtacagagcgcgtcatcgtttcgcagatgcaccgttcg
ccgggcgtattcttcgaccacgacaagggcaagagccattcttccggcaagcttttgttc
gctgcccgcgtcatcccatatcgcggttcctggctcgacatcgagttcgacgccaaggac
atcgtctatgcgcgtatcgaccgtcgccgcaagctgcccgtgacctcgctcctgatggcg
cttggcatggatggtgaagaaatcctgtcgaccttctacagcaaggcttcctacgagcgc
gccggcgatggctggcgcattccgttccagcctgaaacgctgaagaatgccaaggtcatc
accgacatgatcgacgccgacaccggcgaagtcgttgtcgaaggtggcaagaagctcact
ccgcgtcttatccgccagctcgtcgacaagggcctgaaggcacttaaggcgactgacgaa
gacctctacggcaacttccttgccgaagacatcgtcaactactcgacgggtgagatctat
ctcgaagccggcgacgaaatcgacgaaaagacgcttggcctcattcttcagtccggcttt
gacgagattccggtcctcaacatcgaccacgtcaatgttggcgcctatatccgcaacacg
ctgcatgcggacaagaaccagaaccgccaggaagcgctgttcgatatctaccgcgtcatg
cgtccgggtgagccgccgaccatggattcggcagaagcgatgttcaactcgctgttcttc
gatgcagaacgttatgatctctcggctgttggccgcgtgaagatgaacatgcgtctcgac
ctcgacgcggaagacaccgtgcgcacgctgcgcaaggaagacatcctcgctgtcgtcaag
atgctggtcgaactgcgcgacggcaagggcgaaatcgacgacatcgacaacctcggcaac
cgccgtgtgcgttcggtcggcgagctgatggaaaaccagtaccgcctcggccttctgcgc
atggaacgtgcgatcaaggaacgtatgtcctcgatcgaaatcgacaccgtgatgccgcag
gacctgatcaatgcgaagccggcagctgccgccgttcgcgaattcttcggttcctcgcag
ctttcgcagttcatggaccaggtgaacccgctttcggaaatcacccacaagcgccgtctt
tcggctcttggaccgggtggtctgacccgtgagcgcgccggcttcgaagtccgcgacgtt
catccgacccactacggccgtatttgcccgatcgaaacgccggaaggcccgaacatcggt
ctgatcaactcgcttgccacctttgcccgcgtcaacaagtacggcttcatcgaaagcccg
taccgcaagatcatcgacggcaaggtgacgaccgacgttatctacctctccgctatggaa
gaggccaagtactacgtcgcacaggccaatgccgagctcgatggcgaaggcgccttcact
gaagagttcgttgtttgccgtcactcgggcgaagttatgctcgcaccgcgcgacaacatt
aacctgatggacgtttcgccgaagcagctcgtttcggtcgcagcggctctcattccgttc
ctggaaaacgacgacgccaaccgcgctctcatgggctcgaacatgcagcgtcaggccgtt
ccgcttctgcgggcggaagcgccgttcgtcggcacaggcatggaaccgatcgtcgcccgt
gactccggcgctgccatcgcggctcgccgcggcggtgtcgtcgaccaggtggatgcgacc
cgtatcgttatccgcgctacggaagaactcgatgccggcaagtcgggcgtcgatatctac
cgtctgcagaagttccagcgttcgaaccagaacacctgcgtcaaccagcgtccgctggtc
gctgtcggtgacatcatctccaagggtgacatcatcgctgatggtccgtcgaccgacctc
ggcgatctggcgctcggccgtaacgcgctcgtcgcgttcatgccctggaacggctacaac
tacgaagactcgatcctgatgtcggaacgtatcgtttccgacgacgtgttcacctccatc
cacatcgaagaattcgaagtgatggcgcgtgacacgaagcttggtccggaagaaatcacg
cgtgacattccgaacgtttcggaagaagcgctgaagaacctcgacgaagccggtatcgtt
tacatcggtgcggaagttcagccgggcgatatcctcgtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggtgaaaaggcttcc
gacgttcgcgacacctccatgcgcatgcctccgggcacgtttggtaccgttgtggaagtc
cgcgtcttcaaccgtcacggtgtggagaaggatgagcgcgcgatggcaatcgagcgcgaa
gagatcgaacgtctggcaaaggaccgcgacgacgaacaggcaattctcgaccgtaacgtc
tacggccgcctgatcgacatgctgcgtggtcacgtttccatcgccggtccgaagggcttc
aagaagggcgtcgagctttccaacgccgtcgtctccgaatatccccgctcgcagtggtgg
atgtttgcagtcgaagacgagaaggcccagtccgaactggaagcacttcgcggccagtac
gacgaatccaagtcgcgccttgaacagcgcttcatggacaaggtcgagaaggtccagcgc
ggcgatgaaatgcctcctggcgtcatgaagatggtcaaggtcttcgtcgctgtgaagcgc
aagatccagccgggcgacaagatggccggccgtcacggtaacaagggcgtcgtctcgcgt
atcgttcctgtcgaggacatgccgttcctcgaagacggcacgcatgtcgacatctgcttg
aacccgctcggcgtgccttcgcgcatgaacgtcggccagatcctcgaaacccacctcgca
tgggcatgcgccggtatgggcaagaagatcggcgagatgctcgaagagtatcgcaagacg
atggacatcagcgagcttcgcacggagcttaccgaaatctatgcgagtgaatcgcatgac
gaggtgaagcgcttcgacgacgaatcgctggtcaagcttgccgaagaagccaagcgcggt
gtttccatcgcgaccccggtcttcgacggtgcgcatgaacccgacgttgccgcgatgctg
aagaaggcaggtctgcatgaatccggtcagtccgttctttatgacggtcgtaccggcgag
ccgttcgaccgcaaggtcaccgtcggctacatgtacatgatcaagctgaaccaccttgtt
gacgacaagatccacgctcgctcgatcggtccttactcgctcgttacccagcagccgctg
ggcggcaaggcgcagttcggcggacagcgcttcggggaaatggaagtctgggctctggaa
gcatacggcgcggcttacacgctgcaggaaatgctcaccgtcaagtcggacgacgtggcg
ggccgcaccaaggtctacgaggcgatcgtccgtggcgacgataccttcgaggccggtatc
cccgagagcttcaacgttctcgtcaaggaaatgcggtcgctcggtctttcggtcgaactg
gagaactcgaaggtcgagacccagcccgaggatcagctgcccgacgcagcggaataa
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integrated database retrieval system
