KEGG   Arabidopsis thaliana (thale cress): AT1G09530
Entry
AT1G09530         CDS       T00041                                 
Symbol
PIF3
Name
(RefSeq) phytochrome interacting factor 3
  KO
K12126  phytochrome-interacting factor 3
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath04075  Plant hormone signal transduction
ath04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:ath00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04075 Plant hormone signal transduction
    AT1G09530 (PIF3)
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    AT1G09530 (PIF3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ath03000]
    AT1G09530 (PIF3)
Transcription factors [BR:ath03000]
 Eukaryotic type
  Basic helix-loop-helix (bHLH)
   HLH domain only
    AT1G09530 (PIF3)
SSDB
Motif
Pfam: HLH bHLH_SAC51 bHLH_LHW
Other DBs
NCBI-GeneID: 837479
NCBI-ProteinID: NP_001322701
TAIR: AT1G09530
UniProt: O80536 A0A5S9TG51
LinkDB
Position
1:3075768..3079654
AA seq 524 aa
MPLFELFRLTKAKLESAQDRNPSPPVDEVVELVWENGQISTQSQSSRSRNIPPPQANSSR
AREIGNGSKTTMVDEIPMSVPSLMTGLSQDDDFVPWLNHHPSLDGYCSDFLRDVSSPVTV
NEQESDMAVNQTAFPLFQRRKDGNESAPAASSSQYNGFQSHSLYGSDRARDLPSQQTNPD
RFTQTQEPLITSNKPSLVNFSHFLRPATFAKTTNNNLHDTKEKSPQSPPNVFQTRVLGAK
DSEDKVLNESVASATPKDNQKACLISEDSCRKDQESEKAVVCSSVGSGNSLDGPSESPSL
SLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRIN
EKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMSMASGYYLPPAVMFPPGMGHY
PAAAAAMAMGMGMPYAMGLPDLSRGGSSVNHGPQFQVSGMQQQPVAMGIPRVSGGGIFAG
SSTIGNGSTRDLSGSKDQTTTNNNSNLKPIKRKQGSSDQFCGSS
NT seq 1575 nt   +upstreamnt  +downstreamnt
atgcctctgtttgagcttttcaggctcaccaaagctaagcttgaatctgctcaagacagg
aacccttctccacctgtagatgaagttgtggagctggtgtgggaaaatggtcagatatca
actcaaagtcagtcaagtagatcgaggaacattcctccaccacaagcaaactcttctaga
gctagagagattggaaatggctcaaagacgactatggtggacgagatccctatgtcagtg
ccatcactaatgacgggtttgagtcaagacgatgactttgttccatggttgaatcatcat
ccctcccttgatggatattgctctgatttcttgcgtgatgtgtcgtctcctgttactgtc
aacgagcaagagagtgatatggcggtaaaccaaactgctttcccgttgtttcagagaaga
aaggatggcaatgaatcagctcctgctgcttcttcgtcgcagtataacggtttccaatcg
cattctctgtatggaagtgatagagctagagatcttcctagccaacaaaccaatccggat
cggtttactcagacgcaggaaccactaattactagtaacaagcctagtttggtcaacttt
tcacatttcttacgccctgcaacttttgcgaagactactaataataaccttcatgacact
aaagaaaagagtcctcaaagcccgccaaatgtgtttcagaccagagttcttggagctaaa
gactctgaagataaggttcttaacgagtctgttgcttctgctacgcctaaagataaccaa
aaggcttgcctaatatcagaggactcatgtagaaaagaccaagagagtgaaaaagcagtt
gtatgttcttctgttggctcgggtaatagtctcgatggcccatccgaaagtccttcactt
tctttaaagagaaagcattcgaatattcaagacattgactgtcatagtgaagatgtggaa
gaagaatcaggagatggaagaaaggaagcaggtccatctcgaacgggtttgggttcaaag
agaagccgctctgcagaagtgcataatctgtctgaaaggagacggcgtgataggatcaac
gagaagatgcgtgccctgcaagaactcattccaaactgtaacaaggtggacaaagcttcg
atgctagatgaagccatcgagtatctcaagtcactccaacttcaagtgcagatcatgtca
atggcgtctggttactatctgccaccggcggttatgttcccaccgggtatggggcattac
ccggcagcagctgctgcaatggcaatgggtatgggaatgccttatgcaatgggcttgcct
gatttgagccgtggtggttcatcggttaaccacggaccacagttccaagtctcggggatg
caacaacaaccagtggcgatgggtattccacgtgtctctggtggtggtatctttgccggt
tcttcgacgattggcaatggctcgactagagatttatctggttctaaagatcaaacaacg
acgaataacaacagtaacttgaaaccaataaagagaaaacaggggtcttctgatcagttt
tgtggatcgtcgtga

KEGG   Arabidopsis thaliana (thale cress): AT2G43010
Entry
AT2G43010         CDS       T00041                                 
Symbol
PIF4
Name
(RefSeq) phytochrome interacting factor 4
  KO
K16189  phytochrome-interacting factor 4
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath04075  Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:ath00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04075 Plant hormone signal transduction
    AT2G43010 (PIF4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ath03000]
    AT2G43010 (PIF4)
Transcription factors [BR:ath03000]
 Eukaryotic type
  Basic helix-loop-helix (bHLH)
   HLH domain only
    AT2G43010 (PIF4)
SSDB
Motif
Pfam: HLH bHLH_SAC51 bHLH_LHW
Other DBs
NCBI-GeneID: 818903
NCBI-ProteinID: NP_565991
TAIR: AT2G43010
UniProt: Q8W2F3 A0A654F1E9 B9DFT8
LinkDB
Position
2:17886101..17889087
AA seq 430 aa
MEHQGWSFEENYSLSTNRRSIRPQDELVELLWRDGQVVLQSQTHREQTQTQKQDHHEEAL
RSSTFLEDQETVSWIQYPPDEDPFEPDDFSSHFFSTMDPLQRPTSETVKPKSSPEPPQVM
VKPKACPDPPPQVMPPPKFRLTNSSSGIRETEMEQYSVTTVGPSHCGSNPSQNDLDVSMS
HDRSKNIEEKLNPNASSSSGGSSGCSFGKDIKEMASGRCITTDRKRKRINHTDESVSLSD
AIGNKSNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAI
DYLKSLQLQLQVMWMGSGMAAAAASAPMMFPGVQPQQFIRQIQSPVQLPRFPVMDQSAIQ
NNPGLVCQNPVQNQIISDRFARYIGGFPHMQAATQMQPMEMLRFSSPAGQQSQQPSSVPT
KTTDGSRLDH
NT seq 1293 nt   +upstreamnt  +downstreamnt
atggaacaccaaggttggagttttgaggagaattatagtttgtccactaatagaagatct
atcaggccacaagatgaactagtggagttattatggcgagatggacaagtggttctgcag
agccaaactcatagagaacaaacccaaacccagaaacaagatcatcatgaagaagcccta
agatccagcacctttcttgaagatcaagaaactgtctcttggatccaataccctccagat
gaagacccattcgaacccgacgacttctcctcccacttcttctcaaccatggatcccctc
cagagaccaacctcagagacggttaagcctaagtccagtcctgaacctcctcaagtcatg
gttaagcctaaggcctgtcctgaccctcctcctcaagtcatgcctcctccaaaatttagg
ttaacaaattcatcatcggggattagggaaacagaaatggaacagtactcggtaacgacc
gttggacctagccattgcggaagcaacccatcacagaacgatctcgatgtctcaatgagt
catgatcgaagcaaaaacatagaagaaaagcttaatccgaacgcaagttcctcatcaggt
ggctcctctggttgcagctttggcaaagatatcaaagaaatggctagtggaagatgcatc
acaaccgaccgtaagagaaaacgtataaatcacactgacgaatctgtatctctatcagat
gcaatcggtaacaagtcgaaccaacgatcaggatcaaaccgaaggagtcgagcagctgaa
gttcataatctctccgaaaggaggaggagagataggatcaatgagagaatgaaggctttg
caagaactaatacctcactgcagtaaaactgataaagcttcgattttagacgaagccata
gattatttgaaatcacttcagttacagcttcaagtgatgtggatggggagtggaatggcg
gcggcggcggcttcggctccgatgatgttccccggagttcaacctcagcagttcatacgt
cagatacagagcccggtacagttacctcgatttccggttatggatcagtctgcaattcag
aacaatcccggtttagtttgccaaaacccggtacaaaaccagatcatctccgaccggttt
gctagatacatcggtgggttcccacacatgcaggccgcgactcagatgcagccgatggag
atgttgagatttagttcaccggcgggacagcaaagtcaacaaccgtcgtctgtgccgacg
aagaccaccgacggttctcgtttggaccactag

KEGG   Arabidopsis thaliana (thale cress): AT3G59060
Entry
AT3G59060         CDS       T00041                                 
Symbol
PIL6
Name
(RefSeq) phytochrome interacting factor 3-like 6
  KO
K16189  phytochrome-interacting factor 4
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath04075  Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:ath00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04075 Plant hormone signal transduction
    AT3G59060 (PIL6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ath03000]
    AT3G59060 (PIL6)
Transcription factors [BR:ath03000]
 Eukaryotic type
  Basic helix-loop-helix (bHLH)
   HLH domain only
    AT3G59060 (PIL6)
SSDB
Motif
Pfam: HLH bHLH_SAC51 bHLH_LHW Tom22
Other DBs
NCBI-GeneID: 825075
NCBI-ProteinID: NP_191465
TAIR: AT3G59060
UniProt: Q84LH8 B9DH29 A0A5S9XMU6
LinkDB
Position
3:complement(21827905..21830837)
AA seq 444 aa
MEQVFADWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQARREPSVQVQTHKQET
LRKPNNIFLDNQETVQKPNYAALDDQETVSWIQYPPDDVIDPFESEFSSHFFSSIDHLGG
PEKPRTIEETVKHEAQAMAPPKFRSSVITVGPSHCGSNQSTNIHQATTLPVSMSDRSKNV
EERLDTSSGGSSGCSYGRNNKETVSGTSVTIDRKRKHVMDADQESVSQSDIGLTSTDDQT
MGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAID
YLKSLQMQLQVMWMGSGMAAAAAAAASPMMFPGVQSSPYINQMAMQSQMQLSQFPVMNRS
APQNHPGLVCQNPVQLQLQAQNQILSEQLARYMGGIPQMPPAGNQMQTVQQQPADMLGFG
SPAGPQSQLSAPATTDSLHMGKIG
NT seq 1335 nt   +upstreamnt  +downstreamnt
atggaacaagtgtttgctgattggaattttgaagataattttcacatgtccactaataaa
agatcaatcagaccagaagatgaattagtggagctattgtggagagatggtcaagtggtt
ttacaaagccaagctcgtagagaaccgtcagtccaagtccaaacccacaaacaagaaacc
ctaagaaaacccaacaatatttttcttgacaaccaagaaacagtacaaaagcctaactac
gctgctctagatgatcaagaaaccgtctcctggatacaataccctccggatgacgtcatc
gaccctttcgaatccgagttctcctctcatttcttctcttcgatcgatcacctcggaggt
cctgagaagccacgaacgatcgaagagacagttaagcatgaggctcaagccatggctcct
cctaagtttagatcctcggttataacagtcggaccgagtcattgcggcagcaaccagtca
acaaatattcatcaggccactacacttccggtttctatgagtgatagaagcaagaacgtc
gaagaaagacttgacacttcgtcaggtggctcctccggttgcagctatggaaggaacaac
aaagaaaccgttagtggaacaagtgtaaccattgaccgtaaaagaaaacatgttatggat
gctgatcaagaatctgtgtctcaatcagatataggtttgacctcaaccgatgatcaaacc
atgggtaacaaatcgagccaacggtcaggatctactcgaagaagccgtgcagctgaagtt
cataatctctcagaaaggaggaggagagatcggatcaatgaaagaatgaaagctcttcaa
gaactcatacctcactgcagcagaacagataaagcttcgatattggatgaagcaattgat
tacttaaaatcacttcaaatgcaactccaagtgatgtggatgggaagtggaatggcggcg
gcggcagcagcagcagcaagtccgatgatgtttcccggggtacaatcatctccatacatt
aatcagatggctatgcaaagtcagatgcaattgtctcaattcccggttatgaaccggtcc
gctccgcagaaccatcccggtttagtatgtcaaaacccggtacagttgcagctccaagca
cagaaccaaatcttatcggagcagctcgctaggtacatgggcgggattccccagatgccg
ccggcgggaaatcagatgcagaccgtgcaacaacaaccagcggacatgttgggatttgga
tctccggcgggaccgcaaagtcaactgtcggcaccggcgaccaccgacagtcttcatatg
ggtaaaataggctga

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