Arabidopsis thaliana (thale cress): AT1G27470
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Entry
AT1G27470 CDS
T00041
Name
(RefSeq) transducin family protein / WD-40 repeat family protein
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
AT1G27470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ath03009
]
AT1G27470
Ribosome biogenesis [BR:
ath03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
AT1G27470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
SdiA-regulated
Motif
Other DBs
NCBI-GeneID:
839638
NCBI-ProteinID:
NP_174067
TAIR:
AT1G27470
UniProt:
Q8VYS4
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All DBs
Position
1:complement(9540049..9544303)
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AA seq
810 aa
AA seq
DB search
MFEYRCSSIDWKPSPVVALATSADGSQVAAAREDGSLELWLVSPGASSWHCQLIIHGDPK
SRISHLAWFGTGSKGSSSARLFSSSIDGSISEWDLFDLKQKVVLDSIGFSIWQIALAPIS
IEAESKEAKLIQNGYLSEKSDDEEESGVEDDSELDELDEKVEALDRHLAAACDDGCVRIY
YISESDKLTYYRSLPRVTGRALSVTWSADAQRIFSGSSDGLIRCWDANLCHEVYRITVGL
GGLGNGSELCIWSLLSLRYGVLVSGDSTGSVQFWDSQHGTLLQAHSNHKGDVNALAASPS
HNRVFSAGADGQVILYKLSGGTSRSQDFKPSSAQKWDYIGCVRAHTHDIRALTVAVPISW
EGSIPDRNAKVTSPKQRRKEPAGFSYHKWAHLGVPMLISAGDDAKLYAYSVQEFTKFPPH
DICPAPQRVPMQMVHNTVFNQTSLLLVQDSCSLDILRIHISNDSSGRVSTKPLVRVKSKD
ARKIICSAISNTGSLFAYSDQVRPSLFELKKNKIGKNPWSANRKRLPNLPFAHSMVFSCD
CSRLIIAGHDRRIYIVDVGSMELLHSFTPRQEGQEGESPPHEPPITKLYTSSNDDWLAAI
NCFGDIYVFNLETQRQHWFISRLDGASVAAAGFHPRDNNVIVISTSSNQVFALDVEAREL
SKWSLLQTFCLPKSYQNFPGEVVGLSFSPSPCSSSVIIYSSRAKCLIEFGKPAEQDEDTD
TPCNLSEKLEGKLASISMKLGNGAQKRRLEEYQKESKSNKRKKFEMVTSKHPVLYLRHLS
KSAILVIEKPWMEVIKNLDTQPVHRHIFGT
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagtaccggtgcagctccatcgattggaagccatctccggtggtagctctggcc
accagcgccgacggttctcaggtcgccgcagctcgtgaggatggttctcttgagctctgg
ctcgtctctcccggtgcttcctcttggcactgtcagctcatcattcatggagatccaaaa
tcgagaatctcgcaccttgcgtggtttggtactggttctaaaggttcttcttccgctaga
ttgttttcttcgagcattgatggctcaatttcagagtgggatcttttcgacttgaagcag
aaggtcgtcctagattcaattgggttttcaatctggcaaatagctctggcccctatctct
attgaagcagaaagtaaagaagctaagctgattcagaatggatacttgagtgagaaatca
gacgacgaggaagaaagtggagttgaagatgattcagagttggacgagcttgatgagaaa
gtggaggccttggataggcatcttgcagctgcttgtgatgatggctgtgtgaggatatat
tatatctctgaatctgacaagttaacgtactatagatctttgcctagggtcactggtcgt
gctttaagtgtgacgtggagtgcggacgcacagaggatcttttcaggcagtagcgatggg
ctgataagatgctgggatgctaatctatgccatgaggtatatagaataacagttggactt
ggaggactgggaaatgggtctgagctctgcatctggtcacttctttcattgagatatgga
gttcttgtcagtggagatagtacaggaagtgtccagttttgggatagccagcatggaacc
cttttgcaggcgcattctaatcacaagggtgatgtcaatgctcttgcagcatccccaagt
cataaccgggtgttttctgcaggcgctgatggacaggttattttatataagctctctggt
ggtacatctagatcacaagattttaaaccttcttctgctcagaagtgggattatatcggt
tgtgtaagggctcatacacatgatatcagggctctaactgttgcagtgccaataagttgg
gaaggttccattccagataggaatgcaaaagtaacaagtcctaaacagcgcaggaaggag
ccggctggtttcagttaccataaatgggcacatttgggggttccgatgctcatttcagct
ggtgatgatgccaagctttatgcatactcggttcaagagtttactaagttccctccacat
gatatatgtcctgcgcctcagagagtgcccatgcagatggtacataatacagtgttcaat
cagacttctcttctcttggttcaggattcttgttctttagatattcttcgtattcacata
agcaatgattctagtgggcgtgtctccactaagccattggttcgtgttaaaagtaaagat
gctcggaagatcatatgcagtgcaatttctaacacaggatcactttttgcttattctgat
caagttcgcccaagtctgtttgagttgaagaaaaataaaattggaaagaatccatggagt
gctaatagaaagcgacttcctaatcttccgtttgcccattccatggttttcagctgtgac
tgctctcggctgataatagctggacatgataggaggatatatattgttgacgttggtagc
atggagttattacattcttttacaccacgccaggagggacaggaaggtgaatctcctcct
catgagcctccaattacaaaactgtatactagctcaaatgatgattggttagctgctatc
aattgctttggggacatatatgtgttcaacctggaaacgcagaggcagcattggttcata
tcaaggcttgatggtgcatctgttgcagccgctggttttcatccgagggacaacaatgtg
attgtgatctccacctcttcaaaccaggtctttgcattggatgtggaggctagagagttg
agcaagtggtcattgctgcagactttttgtctgccaaagagctaccaaaattttcctggt
gaggtcgtaggactctcattctctccatcaccatgttcatcatctgtcatcatttacagc
tccagagctaagtgtttgattgaatttgggaagccggcggaacaagacgaagacacggat
acaccatgcaatctgtccgaaaagctagaaggtaaacttgcaagcattagtatgaaattg
gggaatggtgctcaaaaacgtaggttagaggagtatcaaaaagagagtaagagtaataag
agaaagaagtttgaaatggtaacctcaaagcacccagttctatatttacgacatctatca
aaaagtgcaatcttggttatagagaaaccatggatggaggttatcaagaatttggataca
caaccagttcacagacatatattcgggacataa
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