Arabidopsis thaliana (thale cress): AT3G45590
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Entry
AT3G45590 CDS
T00041
Symbol
SEN1
Name
(RefSeq) splicing endonuclease 1
KO
K15322
tRNA-splicing endonuclease subunit Sen2 [EC:
4.6.1.16
]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ath03016
]
AT3G45590 (SEN1)
Enzymes [BR:
ath01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
AT3G45590 (SEN1)
Transfer RNA biogenesis [BR:
ath03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
AT3G45590 (SEN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-GeneID:
823701
NCBI-ProteinID:
NP_001078245
TAIR:
AT3G45590
UniProt:
Q9M1E8
Q2HIF6
A0A5S9XJR3
LinkDB
All DBs
Position
3:16732540..16733854
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AA seq
237 aa
AA seq
DB search
MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC
FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEVDLWRSMSSFKQDFAI
LYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGGNDRLKVWSDIHC
SVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSREDETRT
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
atggcaccaaggtggaaatggaaaggtgctgaggcaaaggcacttgcagaacctgtttcg
aaaacagtctcggagctgagatcttcattgacccaaaccgaggctttaggtttcctctca
agttgtaacgtacttttatcggttgagtcagaggaagctgagcttttggatcgttgttgt
tttggtagactagttgttggtgctgagaaagataagagatggattcagttatcctttgaa
gaagctttctttttgttttacaaactgaaatgcatcaagatttgccttcacggtcgttct
ctggaaaacgaggtagatttatggcgatccatgagttcctttaagcaagattttgcgatc
ttgtacaaggcttattcgcatctacgatcgaagaactggattgtgagatcagggttacaa
tatggagttgatttcgtggtgtatagacatcatccatctcttgtccactctgaatacgcc
gttcttgttcagtccattggcgggaatgatcggttaaaggtgtggtccgatatccattgc
agtgttcgactaaccggaagcgtcgcgaaatcattgttggttctttacgtcaacagaaaa
gtcaacacagagaagatgaatctgcctttgtgtttagaggactacacagttgaagagcaa
acaatacgtagatggagtccagaacttagccgtgaagatgaaaccagaacatga
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