Arabidopsis thaliana (thale cress): AT4G22080
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Entry
AT4G22080 CDS
T00041
Symbol
RHS14
Name
(RefSeq) root hair specific 14
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath00040
Pentose and glucuronate interconversions
ath01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
AT4G22080 (RHS14)
Enzymes [BR:
ath01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
AT4G22080 (RHS14)
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
O-ag_pol_Wzy
Motif
Other DBs
NCBI-GeneID:
828297
NCBI-ProteinID:
NP_193939
TAIR:
AT4G22080
UniProt:
O65456
A0A178UZY8
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Position
4:complement(11700555..11702785)
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AA seq
394 aa
AA seq
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MTLFTVSCLLVVLFLCHSLVHAENNGYYGYTPTVANYLPEKPQNIMNPVDSCWRLKSDWA
ANRKDLADCVVGFGSSTLGGKKGNLYVVTNPYDNAQNPQPGSLRYGVIQAKPLWITFAKD
MVITLENELMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDCKPGKYGMVRS
SPTHVGHRKGSDGDAIAIFGSSNIWIDHCYLASCTDGLIDVIHASTGITISNNYFTQHDK
VMLLGHNDDFVQDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSA
DPTIFSEGNYFIASDKSNSKEVTKREVKGGWNNWRWRTSKDVFKNGAYFVPSGYGSISLP
YSSAQRFTVAPGNLVPSLTADAGPLNCNRNGPCY
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgactcttttcaccgtttcgtgcctcctcgtggtactattcttatgtcattccttggtc
catgccgaaaataatggttattacgggtatacccccacggttgccaactacctccccgag
aaaccgcagaacatcatgaatccggtggactcctgttggcggctcaagtctgactgggct
gccaatcgtaaagacctagcggattgcgtggttggattcggttcatctaccttgggcgga
aagaaaggtaatttatacgttgtcacaaacccttacgacaatgcacagaatcctcaacca
ggttctttgcggtacggcgtgatccaagccaaaccattgtggatcactttcgctaaggat
atggtcataaccctagaaaatgagctcatggtcaatagctataaaaccattgatgggaga
ggggcaaaagtagaaatcgcatacggaccatgcatcacgatacaagacgtgacgaacgta
atcgtgcacgggatcagcatccacgactgcaaaccggggaagtacggtatggtgaggagt
agcccgacgcatgttggtcaccgtaagggatcggacggtgatgcgatcgctattttcggt
tcatcgaatatttggatcgatcattgttacctagcgagttgtacggacgggctcatcgat
gtgatccatgcttccacgggaatcactatttccaacaactatttcactcagcatgacaaa
gtgatgttacttgggcacaacgatgattttgtgcaagatgtgaaaatgaaagtgaccgtg
gcattcaatcattttggaccaggacttgtggagagaatgccaagagtaagacgagggtac
gctcatgtggcaaacaatagatacgataaatggataatgtatgcaattggtggtagcgcc
gatccaaccatttttagtgaaggcaactatttcattgcttctgataaatctaacagcaaa
gaggtgacgaagagagaagtaaaaggaggatggaacaattggagatggagaacctcaaaa
gatgttttcaagaacggagcttacttcgtaccttctggttatggcagcatttcgctacct
tacagttctgctcagcgattcacagtagctccgggaaacttggttccttctttaactgca
gacgctggccctctaaactgcaaccgcaacggcccttgttattag
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