Arabidopsis thaliana (thale cress): AT4G24780
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Entry
AT4G24780 CDS
T00041
Name
(RefSeq) Pectin lyase-like superfamily protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath00040
Pentose and glucuronate interconversions
ath01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
AT4G24780
Enzymes [BR:
ath01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
AT4G24780
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
828580
NCBI-ProteinID:
NP_567707
TAIR:
AT4G24780
UniProt:
Q9C5M8
A0A384LJY2
Q5HZ35
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Position
4:complement(12770221..12772479)
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AA seq
408 aa
AA seq
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MKMQTKKLFITIVSFLLYAPLFLSSPVPDPESVVEEVHKSINASVAGRRKLGYLSCTTGN
PIDDCWRCDPHWEQHRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDNPVSPKPGTLRHA
VVQDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGIH
IHDCKQGGNAMVRSSPRHFGWRTISDGDGVSIFGGSHVWVDHCSFSNCEDGLIDAIMGST
AITLSNNHMTHHDKVMLLGHSDTYSRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNN
DYTHWEMYAIGGSANPTINSQGNRFLAPNIRFSKEVTKHEDAPESEWKRWNWRSSGDLLL
NGAFFTPSGGAASSSYAKASSLGAKPSSLVGPLTSTSGALNCRKGSRC
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgcagacgaagaagctctttatcaccattgtctcctttcttctctatgctcca
ttgttcttatcttcaccagttcctgaccctgaatctgtcgttgaagaagttcacaagagc
attaatgcgtcggttgcaggaagaaggaagttaggttacctctcatgtacgaccggtaac
ccaatcgacgactgttggcgttgtgaccctcactgggagcaacaccgtcaacgtctcgct
gactgcgccattggattcggcaaaaacgccatcggtggccgtgacggtcggatctacgtg
gtcaccgactcaggaaacgacaacccagttagccccaagcccggaactttaagacacgcc
gtggtccaagacgagccactctggatcatcttccaacgagacatgacgattcagctcaaa
gaagagctaatcatgaactcattcaagaccatcgatggccgtggtgcttccgtacacatc
tctggtgggccttgtataacgatccagtacgtgaccaacattatcatccatgggattcat
atccatgattgcaagcaaggtggcaacgctatggtgcggagctctccacggcatttcggg
tggagaacgatatcggacggtgatggtgtctctatctttggaggaagtcatgtttgggtt
gaccattgttcgttctctaactgtgaagatggacttattgatgctatcatgggctcgacg
gctatcactttgtctaacaatcatatgacacatcatgataaggtcatgttgcttggtcat
agtgatacttacagtcgtgacaagaatatgcaagttaccattgcttttaaccattttggt
gaaggccttgtccaaagaatgcccaggtgtagacatggatacttccatgtggtgaacaat
gactacacacattgggagatgtatgcgattggtggaagtgctaatcctacaatcaatagt
caagggaacagatttttggcacccaatatcagatttagcaaagaagtgactaagcatgag
gacgcgcctgagagcgagtggaagagatggaattggagatcttccggagatttgttgcta
aacggtgcgttttttactccgtctggtggtgcagcctcgtctagctatgcaaaggcttcg
agccttggggctaaaccgtcttctctagttggaccattgacgtctacttctggtgcactg
aattgccgtaaaggttcccgttgctga
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