KEGG   Arabidopsis thaliana (thale cress): AT5G06160
Entry
AT5G06160         CDS       T00041                                 
Symbol
ATO
Name
(RefSeq) splicing factor-like protein
  KO
K12827  splicing factor 3A subunit 3
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT5G06160 (ATO)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT5G06160 (ATO)
Spliceosome [BR:ath03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    AT5G06160 (ATO)
 Complex B
    AT5G06160 (ATO)
 Complex C
   U2 SnRNP specific factors
    AT5G06160 (ATO)
SSDB
Motif
Pfam: SF3a60_Prp9_C SDE2_2C SF3A3 SF3a60_bindingd ATP-synt_F6 Desulfoferrod_N
Other DBs
NCBI-GeneID: 830503
NCBI-ProteinID: NP_196234
TAIR: AT5G06160
UniProt: Q9FG01 A0A178UIC7
LinkDB
Position
5:complement(1862325..1866433)
AA seq 504 aa
MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVE
TYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPSGRLVDANEDYEARL
KEEPIIAFSGEEGNGRYLDLHDMYNQYINSKFGERVEYSAYLDVFSQPEKIPRKLKLSRQ
YMKYMEALLEYLVYFFQRTEPLQDLDRILSKVCSDFEEQYADGIVEGLDNELIPSQHTVI
DLDYYSTVEELVDVGPEKLKEALGALGLKVGGTPQQRAERLFLTKHTPLEKLDKKHFARP
PHNGKQNGDAKSTHESENAKEIALTEAKVKKLCNLLDETIERTKQNIVKKQSLTYEEMEG
EREGEEANTELESDDEDGLIYNPLKLPIGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYW
GRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKRIQERQGVNKWRPELEE
EYEDREGNIYNKKTYSDLQRQGLI
NT seq 1515 nt   +upstreamnt  +downstreamnt
atgtcgtcgactctcctcgagcaaactcgctccaatcacgaagaggttgaaaggttggag
cgattggttgtggaagatctacagaaggagccaccgtccagcaaggacagattggtccag
ggacatcgtgttcgtcacatgattgagtctattatgctcaccactgagaaacttgttgaa
acctatgaagataaggatggggcgtgggatgatgagattgcagcgcttggtggccagact
gcgacagggacaaatgtgtttagtgaattttacgatcgtttgaaagagatacgtgaatat
cataaaaggcatccttctggacgtcttgttgatgctaatgaagactacgaagcacgcctg
aaggaggaaccaattattgcgttcagtggagaggaaggcaatggtcggtacttggacttg
catgatatgtataaccagtacatcaactctaaatttggggaaagggttgaatattctgct
taccttgatgttttttctcaaccagagaaaataccgcgtaaactgaagttatcgaggcaa
tacatgaagtatatggaagctctacttgagtacctggtctacttcttccagcgaaccgag
ccgttgcaagatcttgaccggatactttctaaggtttgttctgattttgaagagcaatat
gcagatggaatagtagaaggcctggataatgaacttattccatctcagcatactgtcata
gatcttgattactacagtacagtcgaggaactggtagatgtaggacctgaaaagctaaaa
gaggcattgggggcattaggactgaaggttggtggtactccgcagcagcgtgccgagaga
cttttcctgacaaagcatacgcctttggaaaagctggataagaaacattttgccagacct
ccacacaacggaaaacaaaacggagatgccaaatcaacacatgagtctgaaaatgctaaa
gagattgcactaacagaggccaaagtgaagaaactctgcaatttacttgatgagaccatc
gaaaggacaaaacaaaacattgtaaagaaacagtcgttgacatatgaagaaatggaggga
gaacgtgaaggggaggaagctaataccgaattagaaagtgatgacgaggacggtttgatt
tacaatccgctgaagctaccaataggttgggatgggaagcctataccatactggctctac
aaacttcatggccttggccaggagtttaaatgcgagatatgtgggaactatagctattgg
ggaagaagggcttttgagagacattttaaagaatggcgacaccaacacggaatgcgttgc
ctaggaatcccaaacacaaagaacttcaacgaaatcacttcgattgaggaagccaaagaa
ttgtggaagaggatacaggagaggcaaggagtgaacaaatggaggccagaacttgaagaa
gaatatgaagatcgtgaaggtaacatttacaacaagaagacttactctgatcttcaacgc
caaggtctcatctga

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