Atrimonas thermophila: M15_15700
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Entry
M15_15700 CDS
T10752
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
atho Atrimonas thermophila
Pathway
atho03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
atho00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M15_15700 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atho03021
]
M15_15700 (rpoC)
03400 DNA repair and recombination proteins [BR:
atho03400
]
M15_15700 (rpoC)
Enzymes [BR:
atho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M15_15700 (rpoC)
Transcription machinery [BR:
atho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M15_15700 (rpoC)
DNA repair and recombination proteins [BR:
atho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M15_15700 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BER92826
LinkDB
All DBs
Position
complement(1537328..1542298)
Genome browser
AA seq
1656 aa
AA seq
DB search
MIDVNDLGAVKIALASPEQIRKWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWEC
YCGKYKRIRNKGVVCDRCGVEITRSVVRRERLGHIELAAPVSHIWYFKSIPSKMALLLGI
LPKNLEKVLYFASGRKTEDCYKVINPGSTDLKEEQIIRKTEYDIYRKYDFDFVAEPAYRI
TEVHELPFSVGDRLNLKEYTRYRSKYKNSFSVEEIDEEHFEVVDVRAFPYQRDEVLSESE
VQKLRETFGNLFEETPLTDTVEEPCYIIIDPGKTGLKKAQMILETEAKLLSKYDPDFKAG
VGAEAVREILKSIDVHQLARELRKELKEASGQKAKKIIKRLEVVEAFCKSGNKPEWMILE
VIPVLPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLQLGAPEIIIKNEKRMLQ
EAVDALFDNGRRGRAVLGTGNRPLKSLSDMLRGKKGRFRQNLLGKRVDYSGRSVIVSGPR
LRFDQCGLPKKMALELFKPFVMKKLVDKGYAHNIKSAKRMVDKARDEVWEALEEVIAEHP
VLLNRAPTLHRLSIQAFQPVLVEGNAIQLHPLVCPPFNADFDGDQMAVHVPLSLEAQAEA
QIIMLSSHNILSPANGNPVAVPGQDMVLGCYYMTLLSSKNYEKKKAFLTIDDALLAYDFG
KVDLHEPIRIKEVTQKHPEVEFTTVGRVIFNQLLPEGMPYYNEPVTKKKLLEIISLCYRK
FGNQVTVEMLDRIKETGFHYATRSGSTIGVLDLEVPSQKAEIIEEATRKVAEINEHYSEG
LITSEEREQKVIDVWTEASNKIADAILRNLDDFNPVNMMATSGARGSIRQVSQLAGMRGL
MADPSGRIIDYPIKANFREGLSVLEYFISTHGARKGLADTALRTAKSGYLTRRLVDVAQD
VIVREYDCGVDDGILVTDLLDENKNVVESFEERVLGRTALRDIQDPENGEIIVRAGEEIN
EDAIARMKEKGIREAWVRSVLTCKTRYGVCAKCYGRNLATGKLVDLGEAVGIVAAQSIGE
PGTQLTMRTFHTGGVRIAGEDITQGLPRVEQLFEVRKPKKAAVLSDVDGVVEKIEIVGNR
KKIYVKPLEDEEDQTIRTYLVPHDVRVCVTEGDEVKAGDRLTFGPINPRDILRIKGIREV
QRYLVEEIQSVYLSQGVNINDKHIEVIVRQIARLNKVKVEDAGDTELLSGELVHIEDFER
ENNRIREENRLLLEEAERLFEDLTLHEDVFDFSDQLVVKKDQELNGDALEKILSVECKPF
SVETKDGTLAKVIRGYRSLRAELRGKVCFEELKDREGKTVVKAGEEINEAIIDKIAEMGP
VFLKIREKEIWKRLRGAILAEDVKDPQSGEVLIPADTKLEDHHLDLLQDHEIEKVVVWKN
VRFFPIKDNLIRIVRDEILGQEVAQDIVSPRTGELIVQAGQTISRSIARRLVAEGVKEIP
LVDGKFFSIEGRLSELLEKEVAGKVAAQDIIMGSNGEVLVKAGQVIDRETALRIAEDNVE
VIFLREVEGEKETRALIQEFIYLPSLKQVATGGPVVLGITKASLAVESFLSAASFQQTTH
VLADSAIKGKVDELVGLKENVIIGKIIPAGTGFEKYRKLRLSTEDVSKEQSVLPESEELI
DWKELMGAEERAMEEMDEEDSLEEGIFDADEEEDAE
NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgttaatgacctgggtgcggtgaaaattgctctggcttctccagagcaaatc
cgtaagtggtctcatggagaggttaaaaaaccggaaaccataaactatcgaactcttaag
ccagaaaaagatggtcttttctgtgaaaaaatttttggacccaccaaggactgggaatgc
tattgcggtaaatacaaaagaattcgcaacaaaggtgtagtctgtgatcgctgtggtgtt
gaaattactcgttcagtggtgcgcagggaacgcctggggcacattgaactggcggctccg
gtttcacacatctggtattttaagagtattcccagtaaaatggctttgcttctgggtatt
ttgcccaaaaacctggaaaaggtactttactttgcctcaggcagaaagacggaggattgc
tataaagttatcaatcccggttctaccgacttgaaagaggagcagattattcgcaagacc
gagtacgacatttaccgcaagtacgattttgattttgttgctgagcctgcttacagaatc
accgaggttcacgaattgccattttcagtaggcgaccgcctcaaccttaaagagtacact
cgttaccgttccaagtataagaatagtttttcggtagaggagatagatgaagagcatttt
gaagtagttgacgtaagagcttttccttaccaaagagatgaagtcctttctgaatccgaa
gtgcaaaagctcagggaaacctttggtaatctttttgaagagacaccccttactgataca
gttgaggaaccctgttatatcatcattgacccaggtaaaacgggtctcaaaaaggctcaa
atgattttggaaactgaagctaagttgctttcgaaatatgaccctgattttaaagctgga
gtgggagctgaagcagtccgagaaattttgaagagcatagatgttcatcaattggcgaga
gaactgcgcaaggaacttaaagaagcttcagggcagaaagccaagaaaatcattaagaga
ctggaagttgttgaggctttctgtaagtcgggtaacaagccagaatggatgattctcgaa
gttatacccgttctacctccagatctccggcccatggtacagcttgatggtggtcgcttt
gccacttcggacctcaatgacctttatcgtcgggtgattaaccgcaataatcgcttaaag
cgattactgcagttgggggctccagagatcattatcaaaaacgaaaagagaatgctccag
gaagcagttgatgctctttttgataatggacgccgagggagagcggttctgggcacaggg
aatcgaccgcttaaatccttaagcgatatgcttaggggtaaaaaaggtcgttttcgccaa
aaccttctgggtaagcgtgtggactattccggacgctcagtaattgtttctggaccgcgt
ttgcgatttgaccagtgcggtcttcccaagaagatggccctggaacttttcaagcccttt
gtgatgaaaaaactggtggacaagggttatgctcataatataaagagtgccaagcgcatg
gttgacaaagccagggatgaagtttgggaagctctggaagaggttatcgcagaacacccg
gtactgcttaaccgtgctcctactttgcatcgtttgagtattcaggccttccagccagtc
ctggtggagggcaatgctattcaattgcatcctttggtttgtcctccctttaatgcagac
tttgacggagaccagatggcggtccatgtacctctttctcttgaggctcaggctgaggcc
cagataattatgctttcttcgcataatatcctttcacctgctaacggtaatccggtagcg
gtacctgggcaggatatggttctgggttgttactacatgactttgttgagttcaaagaac
tatgagaagaaaaaagcgtttttaaccattgacgatgccttacttgcttatgattttggg
aaagtggaccttcatgaacccatcaggattaaagaagtcacccagaagcatccggaggta
gagtttaccactgtaggtagagtcatttttaatcagttattacccgaagggatgccttac
tataatgaaccagtaaccaaaaagaagcttttagagataattagtctttgttaccggaaa
tttggcaatcaggttacggtagaaatgttagaccgcattaaggaaaccggctttcactat
gccactcgttctggttcaactattggagtgctggaccttgaagtaccttctcagaaagcc
gagattatcgaagaggcaacgagaaaagtagcagaaatcaacgaacactatagtgagggt
ttaattacttcagaagaaagagagcagaaggttattgatgtttggactgaagcttcaaac
aagattgccgatgccatacttcgcaatctggatgatttcaaccctgttaacatgatggct
acctcaggagccagaggcagcatccgccaggttagtcagcttgcgggaatgcgaggtctc
atggcagatccctctggtagaattattgactatcccatcaaggctaacttccgggaaggc
ttgagtgttctcgagtactttatttccacccatggcgcaaggaaaggacttgctgatact
gccttgagaactgcaaaatctggttacttaacccgtcgcttggtcgatgtagctcaagat
gttatcgtcagagagtacgactgtggtgtggatgatggtatcctggtcacagatctgttg
gatgaaaataaaaacgtggttgagtcttttgaagagcgcgttctgggaagaacagcattg
cgagatattcaagaccctgagaacggagagatcattgtcagagctggtgaagaaatcaat
gaagatgccattgccagaatgaaagagaagggcatcagagaagcttgggtacgttcggtt
cttacctgtaaaactcgctatggcgtttgcgctaagtgttatggccgtaatttggctacc
ggtaagctggtggacctgggtgaagcggtgggtattgttgcggcacagtcgattggagaa
ccaggtactcagctcactatgcgtaccttccacactggtggtgtgcgaatagctggagaa
gatattacacagggtttgccaagagtggaacagctttttgaagttcgtaaacccaaaaag
gcggcagtactctctgatgtggatggagtggttgaaaagatcgagatcgtaggcaacaga
aagaaaatatacgtgaaaccccttgaagacgaagaagaccaaacgattaggacttacctg
gtacctcacgatgtaagagtatgtgtgactgagggtgatgaagtaaaggctggggatcga
ctcacttttggacccattaatccccgagatattctcaggataaaaggtattcgtgaggta
cagaggtatctggtagaggaaatccagtcagtttacctttcccaaggagtcaatattaac
gataaacatattgaggtcatagtacgtcagatagctcgccttaacaaggtcaaggttgag
gacgcaggtgatactgagctcctttctggagaattggtgcatattgaggattttgagaga
gagaataaccgaattcgagaggagaaccgtttgcttcttgaagaagcggaacggcttttt
gaagacttaactttgcacgaggatgttttcgatttttccgatcagcttgtggtgaaaaaa
gatcaagaacttaacggagatgctcttgaaaaaatactttctgtggaatgcaaacccttt
tcggtcgagacgaaagatgggactctggcaaaggtcatcagaggctatcgcagccttaga
gcagagttaagaggtaaagtttgctttgaagagcttaaagaccgagagggaaaaaccgtt
gtcaaggctggtgaagagattaacgaagcaataattgataaaatcgctgaaatggggcct
gtttttctgaaaataagggaaaaggaaatatggaaacgtttgcgtggcgcaattcttgct
gaagatgttaaagatccccagtctggagaggtgcttatccctgctgataccaaattggaa
gatcaccatctcgatttgttgcaggatcatgaaattgaaaaagtagtggtgtggaagaac
gttcgctttttcccaattaaggataatctgattcggattgtcagagacgaaatccttggt
caggaagtggctcaagatatagtcagccccagaactggagaattaattgttcaggctgga
caaaccataagtcgtagcattgcgcgtagattggtagctgagggcgtgaaggaaatacct
ctagttgatggtaagttcttctccatcgaaggaagactcagcgaattgcttgaaaaagaa
gtggctgggaaagtagcagctcaggatattatcatgggtagcaacggtgaagttctggtt
aaagcagggcaggttatagacagggaaacggcgctccgtattgctgaagataacgtggaa
gtgattttccttcgagaagtggaaggggagaaggaaacccgggcgcttattcaggagttt
atatatcttccctctttaaaacaagttgctactggaggtcctgtggttctgggcataacg
aaagcttcgttagccgtggaaagtttcctgtcagcagcttctttccagcaaactactcat
gttctggctgattctgccataaaaggaaaagtagacgagttggtgggcctgaaagaaaat
gtaatcatcggcaaaatcattccagcgggtactggttttgagaagtaccgaaagttgaga
ctctccacagaagatgtttccaaagagcagtcggttttgccagagagtgaagagttgatt
gactggaaagaacttatgggagcagaagaaagagcgatggaagagatggatgaagaagat
tctctggaagaaggaattttcgatgctgatgaggaagaagatgctgaataa
DBGET
integrated database retrieval system
