Amborella trichopoda: 18422063
Help
Entry
18422063 CDS
T02990
Name
(RefSeq) DNA repair protein RAD4 isoform X2
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
atr
Amborella trichopoda
Pathway
atr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
18422063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atr03400
]
18422063
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
18422063
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
18422063
NCBI-ProteinID:
XP_006826912
LinkDB
All DBs
Position
Unknown
AA seq
976 aa
AA seq
DB search
MGGESHPGQEDGRDSSLKKGKATLAEISRDGVGRLLRQTSARRGAKRADNDSSECAPIDQ
LRNKLKAEALETHSEGQQSLTDDVGGVFGGRLVGEGNQEREISQGDFNSKCEVHEGLDWE
DGNISFSNTEVPCIPETLEQEVIVEFSGTPSSAKRQNVRRISAIDKELVELVHKVHLLCL
LARGRLVDAACDDPLIQASLLSLLPPHLLKISEVQKLTADLLVPLVEWFRANFHVRNESI
EKMPFKESLAAAIETREGTPEEVAALSVALFRALNLSTRFLAMLDVTSLKPDADQAVYSS
PEADDSVKGRTFNSSRPIANLGDVFAKLSPQASLHKRKLNEDIGLTSPQNEGKHIKENDT
SSKDKRTGYKSSDAHSCNLETNHFKVSKRKGDVEFELQMEMALSATAAGVFESKVEQEMQ
QKPHSSSTTNSKLNIKEKKLKSEVISERNSFAVWSRKMGPPLYWAEVYCNGETLSGRWVH
VDAANSIVDGEHKVEAAVAACRRSLRYVVAFSGRGAKDVTRRYCMRWYTIASQRIDSEWW
SAVLSPLKELESRAGGSNVMHLDVPLTDNAVEVKEGSGRACVSPEAHLKEGSGRVCVSPE
AHHIEENSEALKEKTPQDIFSSADGLGAGVSRHASSSINIEPVSRGALEDMELETRALTE
PLPSNQLAYKNHPLYTIERWLTRYQVLYPKGPVLGYCSGHPVYPRICVQTLHTKERWLCE
GLQVKENESPAKVVKRSRKVNKVHTSEHGSTVDGGEGTIALYGKWQTEVLNLPPAVDGMV
PKNERGQVDVWSEKCLPPGTVHLRFPRLVPVAKRLGVDFAPAMVGFEFRNGCSIPVYEGI
VACAEFKDAILEAYAEVEERREEEEKKRMEAQALTRWYQLLFSFITRQRLKRSYETPSSS
QVPINATIPNVGDDPCASSQSEANAMQHHNQRGGQIANDLEEHEHSFPLENESYDGESCV
RTKRCACGFSIQVEEL
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggggggagaatcgcatcctggacaagaagatggaagagactcctcccttaaaaaggga
aaagcgactcttgctgaaatttcaagagacggagttggcagattgttgaggcaaaccagt
gctcgaagaggggctaagagagcggacaatgattcaagtgaatgtgcacccattgatcag
ttgagaaacaagcttaaggccgaagcccttgaaacccattcggaaggtcaacaaagtttg
actgatgatgttgggggtgtttttggaggacgattagttggtgaaggaaatcaagaaaga
gaaatcagtcaaggggatttcaactcaaagtgtgaagttcatgaaggtttagactgggag
gatggaaatatttccttttccaatacggaagttccttgtattcctgaaactttagagcag
gaggtgattgttgaatttagtggtaccccatcttctgcaaaaaggcaaaatgttcgtaga
atttctgcgatagataaggaactagtcgagcttgtacacaaggttcatttgctatgttta
cttgcaaggggaaggttagttgatgctgcttgtgatgatcctctaattcaggcttctttg
ctctctctcctacctccccatttactgaaaatttctgaggtccaaaagctaactgcagac
ctattggttccacttgttgaatggtttcgtgcgaattttcatgtccgaaacgaatccatc
gagaagatgcccttcaaggaaagtctggcagctgccattgagacgcgtgaaggaacccct
gaggaggttgctgcattatctgtggctttattcagagctctcaatttgtcaactaggttt
ttggccatgttggatgtgacttcccttaaacctgatgctgatcaggctgtttattcaagt
ccagaagcagacgattcagtaaaggggaggactttcaactcttcaaggcccatagccaac
ttgggagatgtctttgccaagctttctccacaggcttccttgcataaaagaaagctcaac
gaggacattggtcttacaagtcctcaaaatgaagggaagcacattaaagaaaatgataca
tcctctaaggataaaagaactggctataaatcaagtgatgcacatagttgtaacttggaa
acaaatcattttaaagtatcaaaaaggaagggcgatgtagaatttgagttgcagatggaa
atggctctttctgcgactgcagctggtgtctttgagagtaaagtagaacaagaaatgcaa
caaaaacctcattcttcatcaaccactaattctaagctcaatattaaggagaagaaattg
aaaagtgaagtcattagtgagagaaattcctttgcagtctggtcaagaaaaatgggtccg
cctttgtattgggcagaagtctattgtaatggagaaacactgagtggtagatgggtgcat
gttgatgctgcaaattcaattgttgatggcgagcataaagtagaagctgcagttgctgca
tgtcgaagatcgctgagatatgtagttgcattttctggaaggggtgcaaaagatgtaaca
cgcaggtattgtatgagatggtacactattgcatcacagcgtattgattcagaatggtgg
agtgctgttctgagtcctctgaaggagttggagtctcgggctggtggaagtaatgtgatg
catttagatgtgccccttactgataatgctgtagaagtgaaggaagggtcggggagagca
tgtgtttctcccgaagctcatctgaaggaaggatcggggagagtatgtgtttctcctgaa
gctcatcacattgaagagaattctgaggcattaaaggaaaagacgcctcaggatatcttc
agttcagctgatgggcttggagcaggagtgtctaggcatgcaagctcgagtatcaatatt
gaacctgtttcaaggggtgctcttgaggatatggagcttgaaacaagagccttgaccgag
ccccttccatctaatcaactggcatacaaaaaccatcccctttacactattgaaagatgg
ctcaccaggtatcaagtgctttacccaaagggtcctgtacttggatattgttcgggtcat
ccagtttatccacgaatatgtgtgcagacactgcacactaaagagagatggttatgcgaa
ggcttgcaagttaaagaaaatgaatctcctgcaaaggtggtcaagcgctctcggaaagtt
aataaagtgcacacttctgagcatggttccactgtggatggtggtgaagggactattgcc
ctctatggcaagtggcagacagaggtattgaatcttcctccagctgtggatgggatggtc
ccaaagaatgagcgtggtcaagtggatgtgtggtctgaaaagtgcctccctccgggaaca
gtgcacttaaggtttcctaggctggtgcctgttgcaaaaaggcttggagttgattttgcc
cctgcaatggtgggttttgaatttcgcaatggctgctcaattccagtttacgaaggcatc
gttgcatgtgccgagttcaaagatgcaatcttggaggcatatgcagaagtagaagagaga
agggaagaggaagaaaagaaaaggatggaagcccaggccctgactagatggtatcagctt
ctattctctttcataactaggcaaaggttgaaaaggtcttatgagactccatcatcatca
caagtccccattaatgccaccatacccaatgttggtgatgatccatgtgcttcttctcaa
tcagaggctaatgcgatgcaacatcataaccagcgaggtggccaaattgccaatgattta
gaagaacacgagcactcgtttccattggagaatgagagctacgatggggagagttgtgtc
agaactaaacgttgtgcatgtggtttctcaattcaagtggaggaactctag
DBGET
integrated database retrieval system
