Amborella trichopoda: 18428828
Help
Entry
18428828 CDS
T02990
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X2
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18428828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18428828
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18428828
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18428828
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
DUF7605
Motif
Other DBs
NCBI-GeneID:
18428828
NCBI-ProteinID:
XP_006838187
UniProt:
W1NZM9
LinkDB
All DBs
Position
Unknown
AA seq
2426 aa
AA seq
DB search
MCIMIPFASTVISLISFLINDLNESNYESVLNELIQLVDYGLDSSILLLQICFNQVTFNE
GDNRTMQLKLNLFSAVFTYLLGKPNFSTIFCESVRNINMNETFLGDLSRALHLSISEKIG
IGLALSDSDDPDIRMRGQNFCISEIKELSLNTIAGVSYNQIQDIIVFLYQSEDLSKYVDG
FIQMLHLLQLKEKAPSVLTPMLMDNFREIDPLRDLDSFYESTDNDFDAVLAEIQEELSMA
DVMKELGYGCTINGSHCKDILALFSPLNEVRIARIISTIARTRTGLEDNQGAYSTFCSAI
GNNSTTDSSWLSSWNVDVLLDAIKQLAPEINWSSVMENLDHEGFYLPDQEAFSFLMSIYS
SACQDPFPLHAICGSVWKNAEGQLSFLRYAVSVPSEIFTFAHSKRLLAYKEASNKIPNVG
ANQAWICLDLLEVLCELAERGHASTVRALLEYPTKHFPEILLAGLAQINTTYNLLQYELF
SCVFPTMIGSDQNSVSIHYLWHLNPSLTLRGFMDVHRRDPNMIPRILGICQEMKILQTVL
DRTLFPFSIELAVSAARKEYMSLEKWLNENLSAFKDTFFEACLKFLKERIPYDAASDVPA
NPFQHSEATSTVSPEISAIFFKVLQTYAGQLSSRQLADELKRLLATTTRVNPRLQSGGVA
DSSSSEGFPDDVEKEANSYFHQLYTGQLSLDSMVQMLAQFKESSVKREQVIFDCMIQNLF
DEYRFFPRYPERELKITAVLFGSLIKHQLVSHLTLGMALRCVLDALRKSLDSKMFSFGLK
ALEQFTDRLVEWPQYCNHILQISHLRDSHADLVEFIERALARISSSQSDLGGGNSAPTDH
QSPVPQVTQENNEASEASWHLGSGPQISSPLQLQQRHQGFLDDRHKSPISSVNYPKPLLP
SSGQPAAISSHIDIAISQRKPTGVQASPTVPPQQPASGPTPLLSSPGFPRPSRVTSAGFG
AALNIETLVAAAERREVPIEAPASEVQDKILFMINNISAANMEAKSNEFTDVLDEKYYPW
FAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNKEIVKATYENCKVLLRSELIKSSSEER
SLLKNLGSWLGKFTIGRNQALRAKEIDPKVLIIEAYEKGLMIAVIPFTSKILEPCQSSLA
YQPPNPWTMGILSLLSEIYALPNLKMNLKFDIEVLFKNLGVDMKDVKPTSLLKDRVREIE
GNPDFSNKDLGVSQQPQVVSDLNTGIIASLSSVDLQSEAVTSSHPGSHSSVVTQYTAPLH
LAPSGLGEDDKLSTLGLPERIPSCQALTHVSPAQTPFPVSQLSMPTQNIGTYIVVNPKLN
ALGLQLQFQRIVPVALEQAVRDITSPVVERSVTIACMTTRELVLKDYALEADESRIHNSA
NMMAGCLAGSLAHVTCKEPLRIAMSNKLRVLLQPYVTTELLEQAVQLVTNDNLDLGCVII
EQTAVEKALRELDDIFVHALNLRRKLGYEANNYSQGALARLPEALRPKSGRLSAAQQRVY
EDFTRLPMQSHASQSTHATPAGPPPASSGGSAGIVVSRVYTGPLNSNIYSPAQVPAGFTT
IGQPMDHISEEMEVGSAQSPSLPSPHVVQMDGVVHQGGEISGIAPSLSMTPLANDVHPIE
SSTVVKESGAVVPPSPLPLSLSTERIGASISEPLRSMGDALEKYHIVSKKLETLVSKDSG
DVEIQGAINEVPEIILRCISRDECALAIAQKVFRGLYENTSNSLHVQSHLAILVAIRDVC
KLVVKELTSWVIYSDDERKFNKDITVGLMRSELISLAEYDMHLAKLIDSGRNKGATDFAV
DLVKTLVVPESGVGVSELHNLFDALVKLSMRPGSPESLQQLVETARNPPSNVVAQPAFAS
GKDDKARQSRDKKVTSGRVVASREDSNAGSADTGASDPPGFREQVGALLAEWARNCEAPG
MNDATYATYISQLQQSGMLKGDDVTDRFFRVLTELAVAHCLASESHQASQSVLSFAAIDM
YAKLVVLLVKYAAVDQGLNKFIIFPKVLAVTVRVIQKDADEKKASFHPRPYFRLFIKWIM
EFNTPDSVLDTMNFQVLTALANAFHVLQPMKVPGFSYAWLELISHRFYMPKLLMSNSQKG
WPLVQRLLVDLFKFLEPSLRNAELGEAMRVLYKGTLRVLLVLLHDFPEFLCNYHFSFCDV
IPYTCIQMRNVILSAFPRHMRLPDPCLPNLKVDLLPEICNLPVILSEVDAALKVKQMKAE
LDEYLKSRQPGSPFLTELKQRLLVTTSEAAITGCRYNIPLINSLVLYVGMQEIQQLQSKS
TVCTPNYNSAYMDIFEKLTVDLDTEGRYLFLNAVANQLRYPNNHTHYFSCVILYLFAEAS
QEIIQEQITRVLMERLIVSRPHPWGLLITFIELLKNPRYNFWSHPFIKIAPEIERVFDSV
ARSCFVPQNKAMDDGIMPGALPEANR
NT seq
7281 nt
NT seq
+upstream
nt +downstream
nt
atgtgcatcatgattcctttcgcttccactgtgataagcctgattagcttcttgatcaat
gacttgaatgaatcgaactatgagtcggttctgaacgagcttatccagttggttgattat
ggattagacagcagcatactgttgcttcagatctgcttcaatcaagtaacatttaatgaa
ggagacaatcggaccatgcagttgaaattgaatcttttttcagcagtgtttacatatctg
ttgggaaaaccaaattttagcacaattttctgtgaatctgtgagaaatataaacatgaac
gaaacttttcttggagatctctccagggcattgcatttatccatttctgagaaaattggt
attggtcttgccttgtcagattcagatgatccagatatcagaatgagaggtcaaaacttc
tgcatctctgagatcaaagaattatccttaaataccattgctggtgtttcttacaatcaa
attcaggatataattgtatttctatatcagagcgaggatctttccaaatatgtggatggt
ttcatacagatgttgcatttattacagcttaaagagaaggccccctctgtgctgactccg
atgcttatggacaactttagggaaattgacccattgagggaccttgattctttctatgag
tccacagacaatgactttgatgctgtattagcggagatacaggaggagttgagcatggca
gatgttatgaaggaacttggctatggatgcacaatcaatggttctcattgcaaagacatc
ttggcccttttttctcctctgaatgaagttcgcattgcaaggataatcagcacgattgca
cgcacacgcactggccttgaggataatcaaggtgcatattcaacattttgctctgctatt
ggtaacaactcaacgactgattcttcatggctgagctcttggaatgttgatgttctctta
gatgcaataaagcaacttgctccggagattaattggagttctgttatggagaacctggat
catgaggggttttatttgcctgatcaggaggcattctcttttcttatgtctatatattca
agtgcatgccaggatccgtttcctcttcatgctatttgtgggtctgtctggaagaatgct
gaggggcagttgtcttttctgagatatgctgtatctgtaccttctgagatatttaccttt
gcgcattctaagagactcttggcatataaagaagcatcgaataagattccaaatgtgggt
gcaaatcaggcatggatatgtcttgatcttttagaggtgctgtgtgaacttgctgagagg
ggtcatgctagcactgtccgagcattgctagagtaccctactaaacacttccctgagatc
ttgcttgctggacttgctcaaataaatactacatataatctcctccagtatgaactgttt
tcctgtgtattccctaccatgattgggagtgaccagaattctgttagtatccattatcta
tggcatcttaatcctagtctcacactccgggggttcatggatgttcatcgtagagatccc
aacatgatcccaagaattttgggcatttgtcaagagatgaagatccttcagacagtattg
gacaggacccttttcccttttagtattgaattggctgtttctgctgccaggaaggaatat
atgagtttggagaaatggttaaatgaaaatctaagtgcttttaaagacacattctttgag
gcctgcctcaaattcctgaaagagagaataccctatgatgcagctagtgatgtgcctgct
aatccatttcaacattctgaggctacctctactgtttccccggagattagtgccatcttt
tttaaggttcttcaaacttatgctgggcagcttagctctcgccagcttgctgatgaactg
aaaagattgcttgcaactactactcgtgtcaatccacggttgcaaagtggtggagttgca
gattcatcctcttctgagggattcccggatgatgttgaaaaagaagcgaactcatacttt
catcagctttatactgggcagttatcattggattctatggttcaaatgcttgcccaattt
aaggaatcttcagtaaaaagggagcaagtgatctttgactgcatgatacagaatcttttt
gatgaatacaggttcttcccaaggtatcctgaaagggaattgaagattactgcagttctt
tttggctcccttataaagcatcaacttgtgtcccatctcacccttggcatggccttacgc
tgtgtgcttgatgcattgcgtaaatctctcgattcaaaaatgttttcttttggtttaaag
gctttggagcagttcacggaccgtcttgttgagtggccacagtattgcaatcatatccta
caaatatctcatttgcgtgacagtcatgctgatttagtggaatttatagaaagggctctg
gcacgcatttcgtctagtcaatcagatctaggtgggggcaacagtgctcctactgatcat
caaagccctgtgccccaggttacccaggaaaataatgaggcatctgaagcgtcatggcat
ttaggttctgggccacaaatttcttctccgctccagctccaacagagacaccagggtttc
cttgatgataggcataaatcaccaatttcttcagttaactatccaaagccacttctacct
tcttctggacagccagcagcaatttcgagtcacattgatatagctatcagtcaaaggaaa
ccaactggcgttcaggcctctccaacagtgcctcctcagcagcctgcctctgggcctact
ccactgttgtcttctccaggatttccgcgcccttctcgagtgacatctgcaggttttggg
gctgctctgaacatcgaaacactagttgcggctgctgaaagacgggaggttccaatagag
gctcctgcttcagaagttcaagacaagatattatttatgataaataatatttctgctgct
aacatggaggctaaatcaaatgaatttacggacgtcttagatgagaagtactatccatgg
tttgcacagtatatggtgatgaaaagggcaagtattgagccaaatttccatgatttgtac
ttgaagttcttagacaaggttaattcaaaagcattgaataaggagatcgtgaaagctact
tatgagaattgcaaggttttgttgaggtctgagcttataaaatcaagttcggaggagagg
tctctactaaaaaatctaggtagctggctgggaaagttcaccattgggagaaatcaagca
ttgcgggccaaggaaattgatccaaaagtcctaattattgaggcatatgaaaagggattg
atgattgcagtgattccattcacatcaaagatactggagccctgccaatctagtttagct
taccagcctcccaatccatggacaatgggcatccttagtctactttccgaaatctatgca
ttgccaaacctgaagatgaaccttaagtttgatattgaagtgctattcaaaaacttaggt
gtggacatgaaagatgtgaagccaacttcacttctcaaagatcgagttcgagagatagaa
gggaatcctgatttctcgaacaaggaccttggtgtgtcccaacaaccacaagtagtttca
gatctcaatactggaatcattgcctctttaagttcagtggacctgcagtctgaggcagtg
acttcatctcatcctggtagccattctagtgtagtaactcagtatacggctcctcttcat
cttgccccaagtggattaggagaagatgacaaactgagcactttaggattgcctgagcga
ataccttcttgtcaggccttaacgcatgtttctccagcacaaacaccatttcctgttagt
cagctttctatgccaacacaaaatattggaacctacatcgttgtcaatccaaagcttaat
gccctgggtctgcagttgcagtttcagagaattgtaccagtggccttggagcaggctgtc
cgggatataacgtcgcctgttgttgagcgtagtgtaaccattgcatgcatgacaactaga
gaacttgtgttgaaggattatgctttggaagcggatgagagccgtatacacaattctgcg
aacatgatggcaggatgcctagcagggagcttagcgcatgtgacttgcaaggaaccactt
cgtattgctatgtcaaacaagctgcgtgtgttgctgcagccttatgttactactgaactc
cttgaacaagctgtacagcttgtcactaacgataaccttgacctgggttgtgtgataatc
gaacaaactgccgtagagaaggcgcttcgagaacttgatgatatttttgttcatgcactt
aatctacggaggaagctcggttatgaagcgaataattactctcaaggagccttagctcgc
ttaccggaggcacttcgccctaaatcgggtcgcctctctgctgcgcaacagagagtttat
gaggattttaccaggcttccaatgcaatcgcatgcaagtcagagtacacatgctacacct
gctggccccccgcctgcttcgtctggtggttctgctggtattgttgtatcccgggtctat
acaggaccactcaactcaaacatttattctccagctcaagtgccagcgggtttcactact
attggacagccgatggatcatatttctgaagagatggaagtgggatctgctcaatcacct
agccttccctcacctcatgttgttcaaatggatggtgttgttcaccaaggtggagaaatc
agtggcattgcaccttccttatcaatgactcctctagccaatgacgtgcatccaatagaa
tcctccactgttgtcaaagaatctggagctgtggtgccgccttcacctttgcccttgtcc
ttgtccaccgaacggattggggctagcatatcagaacctttaaggagtatgggagatgca
ctggaaaaatatcacatagtttccaagaagctggaaacattggtctcaaaggactctgga
gatgttgaaattcagggtgccataaacgaggtgccagaaatcattcttagatgtataagc
agagatgagtgtgcactggctattgcacagaaggtatttaggggtttatatgagaacaca
tcgaattctttacatgttcaatcacatctcgccatcctggttgccattcgtgatgtttgc
aagcttgttgttaaggaattgacaagctgggtgatttactctgatgatgaacggaagttc
aacaaagatataaccgttggcctcatgcgatcggagcttataagccttgcagagtacgat
atgcatttggcaaaacttattgactcgggaagaaacaaaggtgccactgattttgcagtt
gatcttgttaaaaccttggttgttccggaatctggagttggtgtatcagagctccacaat
ctctttgatgccttggtaaagctctctatgaggcctggatctccagagtcactacaacaa
ctagttgagactgctaggaatccaccctcaaatgtggtagcacagcctgcatttgcaagt
ggcaaggatgataaggccaggcagtcaagggacaaaaaggttacctctggtcgtgttgtg
gcaagtcgggaagacagcaatgcaggttccgctgacactggagcctctgatcctcctggt
tttcgtgagcaggtaggtgcactacttgctgaatgggctcggaactgtgaagctcctggg
atgaatgatgcaacttatgccacttatatctcacagttgcagcaaagtggaatgctaaaa
ggagacgatgtcacggatcgtttcttccgtgttctcacagagttggcggtggcacattgc
ttggcctctgaatcacatcaagctagtcaatctgttctatcatttgctgcaattgatatg
tatgcgaagcttgtggttttacttgtaaagtatgctgcagtggatcaggggctgaataaa
ttcattattttccccaaggttttggctgtgactgtgagagtcattcagaaggatgccgat
gagaagaaagcaagttttcatcccaggccatattttcggttgttcatcaaatggattatg
gaattcaatactcctgattctgttcttgatactatgaatttccaggttttgactgcactt
gcaaatgctttccatgtgctacagcctatgaaagtgccaggttttagctatgcgtggctt
gagttgataagtcaccgattttacatgccaaaattgctcatgagcaattctcagaaaggc
tggcccttggttcaacgcttactcgtcgatctgtttaagttcctggaaccatccttgcga
aatgcagaactaggagaagcgatgcgggtgctgtacaaaggtactctcagggtgctactg
gttctgctgcatgattttcctgagttcctatgcaattaccatttcagcttctgtgatgtg
atcccctacacttgcatacaaatgaggaatgttattcttagtgcattccctcgccacatg
aggctacccgacccatgcctcccaaacttaaaggttgatttgctccctgaaatttgcaac
ttgccggtcattttatcggaggttgatgctgctctaaaggtcaagcagatgaaggctgaa
ttggatgaatatctcaagtcgagacaaccagggtctcctttcctaaccgagctcaagcaa
agattactggttacaacgagtgaagctgcaataactggatgtcgatataatattcccttg
attaactctctggtgctttatgttggaatgcaggaaattcaacaactgcaaagcaagtct
actgtgtgcacgccaaattacaatagtgcatacatggatatctttgagaaactaaccgtg
gaccttgatactgaggggcgataccttttccttaatgcagttgccaaccagttgagatac
cccaacaaccacactcattacttctcatgcgtcattctctacttgtttgctgaagctagc
caggaaattattcaagagcagataactcgagttctaatggaacgcctgattgtcagccgg
cctcatccatggggtttgctcattactttcattgagctattgaagaatcctcgctacaat
ttttggagccatcctttcataaagattgcaccagaaatagagagggtgtttgattcagtg
gctagatcgtgctttgtacctcagaacaaggccatggatgatgggatcatgcctggcgca
ttacctgaggccaaccgctaa
DBGET
integrated database retrieval system
