Amborella trichopoda: 18439634
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Entry
18439634 CDS
T02990
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18439634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18439634
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
18439634
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_17
TPR_2
TPR_14
TPR_1
TPR_11
TPR_CcmH_CycH
TPR_8
TPR_16
ARM_TT21_C
TPR_9
TPR_12
TPR_7
PPTA
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
18439634
NCBI-ProteinID:
XP_020526306
LinkDB
All DBs
Position
Unknown
AA seq
1187 aa
AA seq
DB search
MENGSDEDISRQLQETLDSDPNNYSHHYNLAVFFWENGEKRKEWRDKAAEHLVLCVKLDP
NNGDAFRLLGHYYSHVSVDVQRAAKCYQRAVYISPEDSEAGEALCELLDEGGKEILEVIV
CQEASKKSPRAFWAWRRLGYLQVHQKKWMDAAQSLQHAVRGYPTCADLWEALGLAYQRLG
MFTAAVKSYGRAIELEGGSRVFSLIESGNVLSLLGSFRKGVEQFRLALVIAPENLAAHYG
LASALLGMSKECVNSGAFKWGASLLEEASDIVRGCLHLAGNISSMWKLYGDIQFAYAKCH
PWAIEMKCTEINEESFTASVLSWKKKCCSAARCAKRLYQKALHLAPWEANLSSDVAISQD
LFCSWEEEIALDEHDLQLAEKMSLGALMIEGNNDEFWVKLGCSSKNKALQQHALIRALQL
DISNATAWAYLGKLYKKHGHNLLAKQAFDRARSIDPSLALPWAGMSTYVHDGECSPDEAY
ESCLRAVQTLPVAEFQMALGQLALLSGHLHSSAVYAAAKHAVQRAPHSPEAHNLHGLVSE
ARKDYHSAIDAYKMAMYCINSFAKTASQSDYSDIRVNLARSLCKAGHVLDAIHECGILQS
EGLLDCMGLQVYAVTLYRLGKNDEALLVTKKLVEMVSSMNWTSGAATLALVCKLLYHISG
QETAAAMVLSSPRELLQNSKLSTVACLVTVLDLSGVHRLFFQSSFQKLFSHEDAPILHSL
LAKGIQISHGTDLNLGIKNASLYLRRVLHMYPDSNLIRNQLAFLLLSSRGPTASHTAIRC
IDMDPHAQPVAKGSKSAFEILGSAAVSCYDCCTSKSKLSFQTCKHKFGTSSIQQLQRWLH
RYPWNRKARYFLILNLFQKAREERYPRHLCDNLGRQLTVALNDQGNHVEIYSSYQKFQLL
LCASEISLQIGASSDSKAYATSALGIPVPNSVLFFGHLQLGRIHAASGNMAGLREECSQC
LQLGTNFEIGWISLKMIGTRYKLQISMDEIDAYFEACLKEKDENSQSMWRAIIALVDGQG
FILDNDLDKAEQALAHACSIWDEDSCLHLVHGAICLELARQRSGSQFLSQASESLSKAQE
NSDSRLPFVSALLAQAEASLGAKAKWERNLQLEWMSWPPGYTGNASSVLNGGWWRLSLAS
AMDIHVGLGVIIRLVTCLFWVWSCLLGLLGLQVRSGSTWPGPYLVWF
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacggttcagatgaagatattagcaggcagctacaggaaaccctagactctgat
cctaacaactattcacaccattacaacctcgctgttttcttttgggaaaacggggagaag
agaaaggagtggagggacaaggcagctgaacatttggttctatgtgtgaaactagacccc
aacaatggagatgcctttcgattgcttggccattattacagtcatgtatcggttgatgtg
cagagagctgcaaagtgctaccaaagagcagtatatatcagtccagaagatagtgaagca
ggggaagccttatgtgagttactggatgagggagggaaagagatattggaggtcattgta
tgtcaagaagcttccaaaaagtcacctagagcattttgggcctggaggcgtttgggttac
ttgcaggttcatcaaaagaaatggatggatgccgctcaaagtctccaacatgccgttcgg
ggctatcctacatgtgctgatttatgggaagctctgggtcttgcatatcaacggctgggc
atgttcactgcagctgtaaagtcgtatgggcgtgccattgaactggaggggggctcaagg
gtattttcattaatcgaaagcggcaacgtactatcacttcttggttcgtttagaaaggga
gttgagcagtttcgccttgcattggtgattgcacctgaaaatttggctgcccattatggg
cttgcttctgcactgcttggaatgtcaaaggaatgtgtaaattctggtgcctttaaatgg
ggagcttccttacttgaggaagcctctgacattgtcagaggatgtttgcacttagcagga
aacatttcttccatgtggaagttgtatggggatattcagtttgcatatgcaaaatgtcat
ccctgggccattgaaatgaagtgcaccgaaattaacgaggagtcctttacagcatctgta
ctttcctggaagaaaaagtgttgttcggcagcaagatgtgctaagcgtttgtatcaaaaa
gctctccatctagctccatgggaagccaatctctcgtcagatgttgctatatctcaagat
ctcttctgctcttgggaagaggaaattgccctggatgagcatgatttgcagctagctgag
aagatgtctttgggtgccttgatgattgagggcaacaacgatgagttttgggtcaaacta
ggctgctcgtcaaaaaataaagcattgcaacaacatgctcttatcagggccttgcaattg
gatatctccaatgcgactgcctgggcttatcttggaaagctttacaagaaacatggtcat
aatctactggccaagcaagcatttgatcgagctagaagcatagatccttcactggcattg
ccgtgggcaggaatgtcaacttatgttcatgacggggagtgttccccagatgaggcctat
gaaagctgcctgcgtgccgtgcagacactgccagtagctgaattccaaatggctcttgga
cagcttgctcttctttctggtcatcttcattcttctgcagtatatgcggctgcaaagcat
gctgttcaacgggcaccccactctcctgaggcgcataatctacatggcctggtctctgaa
gcaagaaaagattatcattctgcaattgatgcctataagatggccatgtactgcattaac
agttttgcaaagacagcttcacagtctgattatagtgacatacgcgtcaacctagctaga
tccctttgcaaggcagggcatgtacttgatgctatacacgaatgtggcatattgcaaagt
gaaggtctactggactgcatggggctacaagtatatgcagtgaccttatatagactaggc
aagaatgatgaggccctccttgttacgaaaaaattagttgagatggtttcatctatgaac
tggacaagtggggcagcaacactagcattggtgtgtaaattgctgtaccacatttcaggc
caggagactgcagcagctatggtgttaagcagccctcgagaattgttgcaaaactcaaaa
ttgagtactgtcgcctgtttggttactgttcttgacttgtctggcgtgcatagactgttt
ttccaaagtagctttcagaagctcttctcccatgaagatgctccaatattacactcttta
cttgctaagggtatacagatttcacatggaacagatttgaatctgggaatcaagaatgca
tctctttacctaagaagggttttacacatgtatcctgatagtaatttgataaggaaccaa
cttgctttccttctattatccagcagaggtccaacagcttctcacactgcaataagatgc
attgatatggacccacatgcacaacctgtggccaaaggctcaaagtcagcatttgagatt
ctaggatcagctgcagtttcatgttatgattgttgcacctcgaaatccaagttatctttt
caaacatgtaaacataagtttgggacaagctcaatacaacaattacagaggtggttgcat
cggtacccatggaaccgcaaggcaagatactttcttattcttaatctcttccaaaaggct
cgtgaagagagataccctcgccatctttgtgataaccttgggcgccaactaactgttgct
cttaatgaccaaggaaatcatgtggagatatattcatcttatcagaagttccaacttctt
ttatgtgcttctgaaataagccttcaaattggagcctcttctgatagcaaagcttacgca
acaagtgctctgggcattccagtaccaaacagtgtgctcttttttggacacttacaatta
ggtcgtatacatgcagcatctgggaatatggcgggcctaagagaagaatgcagccagtgt
ttgcaacttgggaccaactttgaaatagggtggatatcactcaaaatgattgggactaga
tacaaattgcagataagtatggatgagattgatgcttattttgaggcttgcctcaaagag
aaagatgagaactcccagagcatgtggagggcaataattgccctagtggatggccagggt
ttcattttggataatgatcttgataaggcggaacaagctctggctcatgcttgttctata
tgggacgaagatagttgccttcatcttgttcatggtgcaatttgtttggagcttgcaagg
caacgatctggctctcaattcttatctcaagcatcggagagtctttcaaaagctcaggaa
aattctgattcacgtttaccttttgtctctgctttgttggctcaagctgaggccagcctt
ggtgccaaagccaagtgggagagaaacctgcaacttgaatggatgtcttggcctccaggc
tacactggtaatgcatccagcgttcttaatggcggatggtggagattaagcttggcttca
gcaatggacattcacgtaggactaggggtgataatcaggttggttacctgcttattctgg
gtctggagctgcctgctgggcctgctgggcttgcaggtcaggtctggttccacttggcct
ggaccttatttggtttggttctag
DBGET
integrated database retrieval system
