Amborella trichopoda: 2546588
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Entry
2546588 CDS
T02990
Symbol
rpoB, AmtrCp014
Name
(RefSeq) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
atr
Amborella trichopoda
Pathway
atr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
2546588 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
2546588 (rpoB)
03400 DNA repair and recombination proteins [BR:
atr03400
]
2546588 (rpoB)
Enzymes [BR:
atr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
2546588 (rpoB)
Transcription machinery [BR:
atr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
2546588 (rpoB)
DNA repair and recombination proteins [BR:
atr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
2546588 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
2546588
NCBI-ProteinID:
NP_904091
UniProt:
P60282
LinkDB
All DBs
Position
CP
AA seq
1072 aa
AA seq
DB search
MLRDGNEGMSTIPGFSQIQFEGFCRFVDQGLAEELHKFPKIEDTDQEIEFQLLVETYQLA
EPLIKERDAVYESLTHSSELYVPAGLIWKVGRDMQEQTVFIGNIPLMNSLGTFIVNGIYR
IVINQILQSPGIYYSSELDHNGISVYTGTIISDRGGRSELEIDRKARIWARVSRKQKISI
LVLPSAMGSNLREILDNVCYPEILLYFPNEKEKKKIGSKENAILEFYQQFSCVGGDPVFS
ESLCKELQKRFFQQRCELGRIGRQNMNQRLNIDIPQNNTFLLPRDVLAATDHLIGMKFGM
GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENVVRGTICGAIRHKFIPTPQNLVTSTP
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLAIHARIGDWGSIRSPFYEISERSKEEQMVYLSPRRDEYYMVM
VAAGNSLALNQDIQDEQVVPARYRQEFVTIAWEHIDLRSIYPLQYFSIGASLIPFIEHND
ANRALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDSGGSAIAQHEGKVIYTDTEKILLS
GNGDTISIPLLMYQRSNKNTCMHQKPQVHRDKYVKKGQVLADGAATVGGELALGKNVLVA
HMPWEGYNFEDAVLISERLVYGDIYTSFHIRKYEIQTHVTSHGPEKITNEIPHLEAHLLR
NLDRNGIVMLGSWVETGDVLVGKLTPQTAKESSYAPEDRLLRVILGIQVSTAKETCLKLP
IGGRGRVIDVRWIQKKGASSYNPEKIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQD
MPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRITPFDERYEQEASRK
LVFPELYEASKRTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKSYMLKLIHQVDDKI
HGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQE
LLGTTIVGGTIPKPEGAPESFRLLVRELRSLALELKHFLVSEKNFQINRKEA
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgctacgggatggaaatgagggaatgtctacaatacctggatttagtcagatacaattt
gaaggattttgtaggttcgttgatcagggcttggcagaagaacttcataagtttccaaaa
attgaagatacagatcaagaaattgaatttcaattacttgtggaaacatatcaattggcg
gaacccttgataaaagaaagagatgctgtgtatgaatcactcacacattcctctgaatta
tatgtacccgcggggttaatttggaaagttggtagagatatgcaagaacaaaccgtgttt
attggaaacattcctctaatgaattctctgggaacctttatagtaaatggaatatacaga
attgtgatcaatcaaatattgcaaagccccggtatttattacagttcagaattggaccat
aacgggatttctgtttataccggcaccataatatcagatcggggaggaagatcagaatta
gagattgatagaaaagcaaggatatgggcccgtgtgagcaggaaacaaaaaatttctatt
ctagttctaccatcagctatgggttcgaatctaagagaaattctagacaatgtttgctac
cccgaaattttattgtatttcccgaatgagaaagagaaaaagaaaattgggtcgaaggaa
aatgctattttggagttttatcaacaattttcttgtgtaggcggggatccggtattttct
gagtccctctgtaaggaattacaaaagagattttttcaacaaagatgtgaattaggaagg
attggtcgacaaaatatgaaccagagattgaatattgatataccccagaacaatacattt
ttattaccacgagacgtattggctgctacagatcatttgatcggaatgaaatttggaatg
ggtacacttgacgatatgaatcacttgaaaaataaacgtattcgttctgtagcagatctg
ttacaggatcaattcggattggctctggttcgtttggaaaatgtggttcgaggaactata
tgtggagcaatcaggcataaatttataccgactcctcaaaacttggtaacttcaactcca
ttaacaaccacttatgaatcgtttttcggtctacaccctttatctcaagttttggatcga
actaatccattgacacagatagttcatgggcgaaaatcaagctatttgggtcccggagga
ttaacagggcgaactgctagttttcgcatacgagatatccatcctagtcactatggacgt
atttgcccaattgacacgtccgaaggaatcaatgttggacttatcggatccttagctatt
catgcaaggatcggcgattggggatctatacgaagtccgttttatgaaatatctgagaga
tcaaaagaggaacagatggtttatttatcaccaaggagagatgaatactatatggtaatg
gtagcagcaggaaattctttggccttgaatcaggatattcaagacgaacaggtcgttcca
gcccgataccgtcaagaattcgtgactattgcatgggaacatattgatcttcgaagcatt
tatcccctccaatatttttctattggagcttccctcattccgtttatcgaacacaatgat
gcgaatcgagctttaatgagttctaatatgcagcgtcaagcagttccgctttctcggtcc
gagaaatgcattgttggaactgggttggagcgccaagcggctttagattcggggggttca
gctatagcccaacacgagggaaaggtcatttataccgatactgaaaagatccttttatca
gggaatggagacactataagcattccattgcttatgtatcagcgttccaacaaaaatact
tgtatgcatcaaaaacctcaggttcatcgggataaatatgttaaaaagggacaagtcttg
gcggatggtgcggctacagttggtggggaactcgctttgggaaaaaacgtattagtagct
catatgccatgggaaggctacaattttgaagatgcagtactaattagcgaacgtctggta
tatggagatatttatacttcgtttcacatccggaaatatgagattcagactcatgtgaca
agccacggccctgaaaagatcactaacgaaatacctcatttagaagctcatttgctccgt
aatttagacagaaatggaattgtgatgctcggatcttgggtggaaacgggtgatgtttta
gtaggtaaattgacgcctcagacagcgaaagaatcatcgtatgccccggaagatagatta
ttacgagtcatacttggaattcaagtatccactgcaaaggaaacttgtctaaaactacct
ataggtggaagaggtcgagttattgatgtgagatggatccagaaaaaaggggcttccagt
tataatccagaaaaaattcgtgtatatatttcacagaaacgtgaaatcaaagtgggtgat
aaagtcgccggaagacatggcaataagggtatcatttccaaaattttgcctagacaagat
atgccttatttgcaagatggaacaccagttgatatggtcttcaacccattaggagtacct
tcacgaatgaatgtgggacagatctttgaatgctcgctggggttagcgggagatctgctg
gacagacattatagaataacaccctttgatgagagatatgagcaagaggcttcgagaaaa
ctagtgtttcctgaattatatgaagccagtaagcgaacagcaaatccatgggtatttgaa
cccgagtatcctggaaaaagcagaatatttgatggaagaacaggagatccttttgaacaa
cctgttataataggaaagtcctatatgctgaaattaattcatcaagtagatgataaaatc
catggacgttccagtggacattatgcacttgttacacaacaaccccttagaggaagggcc
aagcaagggggacaacgagtaggagaaatggaagtctgggctctagagggatttggtgtt
gctcatattttacaagagatgcttacttataaatccgaccatattagagctcgtcaggaa
ctacttggtaccacgatcgttggaggaacaatacctaagcctgagggtgctccagaatct
tttcgattgctcgttcgagaactacgatctttggctctggaactgaagcatttccttgta
tctgagaagaacttccagattaataggaaggaagcttga
DBGET
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