KEGG   Amyelois transitella (navel orangeworm): 106142954
Entry
106142954         CDS       T09957                                 
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    106142954
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atra03019]
    106142954
Messenger RNA biogenesis [BR:atra03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     106142954
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st CSTF1_dimer WD40_CDC20-Fz WDR55 Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_RFWD3 Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_VPS8 WDR90_beta-prop_4th eIF2A Ge1_WD40 Beta-prop_SPT8 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_SCAP RMC1_N Beta-prop_WDR75_2nd Beta-prop_NWD2_C Beta-prop_Vps41 Beta-prop_Nup120_160 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Dicer_dimer
Other DBs
NCBI-GeneID: 106142954
NCBI-ProteinID: XP_060809167
LinkDB
Position
31:complement(join(895958..896048,896909..897059,899216..899309,900958..901108,901370..901530,902249..902387,902891..902982,903700..903854,904326..904429,905308..905394,906092..906168))
AA seq 433 aa
MKETSTDVDTRNVVKNRELLYRMIISQLYYDGYQPIAATLSAAVHADPPCPPSDRLLNLM
VVGLQHEPDRKDRLAASSGAEHLLGTTGLDLEFEMDASSLAPEPATYETAYVTSHKMACR
AGAFSACGQLVATGSVDASIKILDVERMLAKSAPEEVDPGREQQGHPVIRTLYDHTDEIT
GLDFHPREQILVSASRDCCIKLFDITKASAKKAYKSITDAEQVLAVAFHPLGDHIIAAST
HPVIRLYDVTTSQCFVCPVPSHHHTKQVNSIKFSPNGKYFASGSADGSVKLWDTVSNRCF
NTFVNAHDGAEVCSVAFTRNSKYLLTSGLDSSIKLWELASSRCLIQYTGAGTAGKQEHIA
QAVFNHTEDYVMFPDEATTSLCTWHSRSASRCQLMSLGHNGAVRFIVHSGTAPAFLTCSD
DYRARFWYRRNTH
NT seq 1302 nt   +upstreamnt  +downstreamnt
atgaaggaaacaagcactgatgtggacaccaggaatgttgtaaagaatagagagttgctg
tatcgaatgataatcagccaactttattacgacggatatcagcctatagctgcaactcta
tccgcagcggtgcacgccgaccccccgtgcccaccaagtgataggcttttaaatctcatg
gtggtgggcctccagcacgagccggaccgcaaggatcggctggcggcgtcaagtggagct
gagcatttgcttggcactactggattggatctcgaattcgaaatggacgcgtcttcgttg
gcccccgagccggccacttacgagacggcgtacgtgacgtcacacaagatggcgtgccgc
gcgggcgcattcagcgcgtgcgggcaactcgtcgctacgggcagtgtggacgctagtatt
aagattctggacgtggaaaggatgctggccaagtcggcacccgaggaggtggatcctggg
cgggagcaacaaggtcaccccgtcatcaggacgctatacgaccacacagacgagataaca
ggtctggatttccacccgagggagcagattctagtctcggcgtcgcgcgactgttgcata
aaactgtttgatatcacaaaagcgtccgccaagaaggcctacaagtctataactgacgcg
gaacaagttttggctgtggcattccacccgctcggagatcacatcatagcggctagcacc
catcccgtgatccgcctttacgacgtcaccacaagccagtgtttcgtgtgtcccgtgccg
tcgcatcatcacactaaacaagtcaactctatcaagttctccccgaacggcaaatatttc
gccagcggcagcgcggacggctcggtgaaactgtgggacactgtctcgaacagatgtttc
aacacgttcgtgaacgcccacgacggtgccgaagtgtgttccgtggcgttcaccaggaac
agcaagtacctcctaacgtccggtctcgattcgtccatcaaactttgggagcttgcgagc
agcagatgtctcatacagtacacaggcgccggtacagctggcaagcaagaacacatagcc
caagcggttttcaatcacacggaggactatgtgatgttccctgatgaagccaccacctcc
ctgtgcacctggcattcgaggagtgccagccggtgccagctcatgtccctgggtcacaac
ggagctgtgagattcatagtacactctgggactgcgccggcgtttctaacatgcagtgac
gattacagagctaggttttggtataggaggaatactcattag

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