Agelaius tricolor (tricolored blackbird): 139603094
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Entry
139603094 CDS
T10815
Symbol
COL9A2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc04510
Focal adhesion
atrc04512
ECM-receptor interaction
atrc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139603094 (COL9A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139603094 (COL9A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
139603094 (COL9A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
atrc00535
]
139603094 (COL9A2)
Proteoglycans [BR:
atrc00535
]
Extracellular matrix (ECM) proteoglycans
Others
139603094 (COL9A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
139603094
NCBI-ProteinID:
XP_071309655
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MARATTLVSQLWLLLQASCLCMAQLRGPPGEPGPRGPPGPPGVPGADGIDGDKGPVGSAG
SPGVKGEPGAPGPDGAPGKPGIDGLTGAKGEPGPTGRPGTKGQPGLPGPPGLPGPSLPGP
PGLPGQVGLPGEIGVLGPKGDPGPDGPRGPPGPPGKPGLPGHLQGLEGSADFLCPTSCPP
GPKGPQGLQGLKGHRGRPGALGEPGKQGEPGPKGDVGASGEQGVPGPPGPQGLRGYPGMA
GPKGETGPAGYKGMVGSIGAAGRPGREGPKGPPGSPGDKGELGGRGIRGPQGDIGPKGEN
GLPGIDGKDGTPGIPGVKGGTGQAGRPGTPGHRGQAGLPGQPGSKGGPGDKGESGPRGHP
GVTGAPGQLGEPGPRGEQGPQGVPGPKGDRGERGLVGPPGEQGRAGPKGEQGPPGIPGPQ
GLPGVKGDKGSPGKTGPKGSTGDPGVHGLAGLKGEKGESGEPGPKGQQGIQGELGFPGPS
GDAGAPGIRGYPGPPGPRGLVGERGVPGMPGPRGTAGRDAGDQHIVDVVLKMLQEQLAEV
AVSAKRAALGGVGAMGPPGPPGPPGPPGDQGPHGPMGPRGVPGILGAAGQIGNVGPKGKR
GEKGERGEVGRGHPGMPGPPGIPGLPGIPGHAVDGKAGERGQPGSPGEAGRPGLPGPAGL
PGFCEPAACLAASAYAAARLTEPGSVKGPSF
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtgccaccacgctggtgtcgcagctctggctcctgctccaagcctcctgcctc
tgcatggcccagctccgagggccaccaggagagcctggcccacgagggccccctggtccc
ccaggagtgccaggagctgatggcatcgatggtgacaaaggccctgtaggatctgctggc
tccccgggtgtcaagggtgagcctggagcccctggcccggatggagccccagggaagccg
ggcattgatggcctgacgggagccaaaggggagccaggacccactggcaggccaggaacc
aaaggccagcccggactcccagggccaccagggctccctggtccttcgctgccagggcct
cctgggcttccaggccaggttggacttcccggggagatcggagtgctgggacccaagggt
gaccccggacccgacggcccgaggggtcccccaggccctccagggaaacctggactccca
ggacacctccaaggcctggaaggcagcgctgatttcctgtgtcccaccagctgcccccca
ggtcccaaaggcccccagggactgcagggactgaagggacaccgaggccgccccggcgcc
cttggagagcctggaaagcagggagagccgggccccaagggagacgttggtgcctctgga
gaacaaggagtcccaggccctccgggacctcagggcctcagggggtatcctggcatggca
ggacccaaaggggagacgggccctgctggctacaagggcatggtcgggagcatcggagcc
gccgggcggccgggcagggaaggccccaagggaccacctgggagccctggtgacaaggga
gagctgggtggccgtggcatcaggggaccccagggtgacattggccccaagggggagaat
ggtctcccgggcatcgatggcaaggatggcaccccagggatccccggagtgaagggtggc
acaggacaggccggacggccgggaacgccgggacaccggggacaagctggattgccaggc
cagccgggaagcaaaggtggcccaggtgacaagggtgaatcgggtccccgcggccacccc
ggtgtcaccggtgccccagggcagctcggcgagcccgggcctcggggtgagcagggcccg
cagggcgtccccgggccgaagggtgacaggggcgagcgtggcctcgtgggaccgcccggg
gagcagggcagagcggggccaaagggtgagcagggcccaccaggcatcccaggaccccaa
ggcctgcctggagtcaaaggagacaagggctctccagggaaaactggccccaaaggcagc
actggagatccaggtgtccacggcctggcagggctcaagggagagaagggggagtcggga
gagccaggacccaagggacagcaaggcatccagggcgagctcggctttcccggcccctcg
ggggatgcgggagcgccgggaattcggggctatcccggcccgcccggcccgcgggggctg
gtgggggagcgcggagtgccgggaatgccgggcccaaggggcacagccggccgggacgct
ggggaccagcacatcgtggacgtggtgctgaagatgctgcaagagcagctggcagaggtg
gccgtgagcgccaagagagccgccctgggtggggtcggggccatgggaccccctggtccc
cctggccccccagggccacccggtgatcagggaccccacggccccatgggaccccgaggt
gtccccggaatcctgggagctgccgggcagatcggcaatgtcggacccaaagggaagaga
ggagagaagggcgagcggggagaggttggccgtggccacccgggaatgccgggtcctcca
gggatcccaggtctcccgggcatccccggccacgctgtggacggcaaggcgggcgagcgg
ggccagccgggctctccaggcgaggcgggccggccgggcctgccggggcccgcgggcctg
cccggcttctgcgagcccgccgcctgcctggcagcctcggcctacgcggccgcccgcctc
acggagccgggcagcgtcaagggcccctcgttctga
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