Amaranthus tricolor (tampala): 130800131
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Entry
130800131 CDS
T09367
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130800131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130800131
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
130800131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_11
TPR_2
TPR_1
TPR_14
TPR_17
TPR_16
TPR_12
TPR_8
TPR_CcmH_CycH
TPR_19
TPR_6
ARM_TT21_C
TPR_9
TPR_7
BTAD
DUF6584
TPR_NPHP3
FRP
Motif
Other DBs
NCBI-GeneID:
130800131
NCBI-ProteinID:
XP_057519467
LinkDB
All DBs
Position
14:20624..56893
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AA seq
1168 aa
AA seq
DB search
MMQEYSNIDLKLLEELVQSNPDDPSHHFNLGKCLWEKGIEWREKAAERFLMAAKLNPQNG
EAFKYLGHYYSCFCMDTHRSLKCYQRAVSLNADDAQSGEALCNLLDVQSKESLEVAICRE
ASGKSPRAFWAFSRLGFLLIHQNKWSEAIQSLQHAIRGYPSSADLWEALGLAYQRLGMYT
AAIKSYGRAMELETSRAFAMIETGNIFLMLGSYRKGVEQFQHALKIWPQNLGAQYGLASG
LLASAQECSKQGAFSWATSLLEEASEIAKACAIVAGNMFCVWKLHADIQLTYAKCFPWTE
GDDVKGEEAFNRSLLSWKKKRRLAAVSANRSYQRALHLVPWQANIYMDIAVTVDLMCSLQ
SYEDGFRFWKLTEKMLLGSLLLEGDNHEFWMALGCMSDNKALKQHAFIRGLHLDVSLASA
WAYLGKIYKEEGKSQLGRQAFDRARSIDPSLALPWAGMSSDILTQEPTSDEAYESCLRAV
QIMPFAEFQIGLAKLALRSNHLLSPEVYGAIKQALQCAPWYSESHNLNGLISEARHDYES
AVASYRLAHYALKTSTLPLSHSQSHFVDISVNLSRALCKVGYVQDAVQELEDLKGGGLLN
IEGLQIYAFALWELGQHDRALLAIRELAKCIPTMKLSSAVTSICLICSLQYSISGAGSTI
NSILKMPRKLLQSTKVSFIISAIDAVHQSYQLQALVSSTRYSLSSQEEIMEMHLLIALSK
LMRSGQHSLSMQNGIDHLRKALHMYPNGSSLRNMLGYFLLSRKQRGNDHVVRRCCVVAAF
DPIKQDFRSSHEIIGAEAVACLATSSCKSNFLLPTCIYQSAQSVSILGLMQRWFHREPWN
HNTRYLLVLGLLQIARQTKYPQHLMSALKRMTNAALTSQLFVENTFERYKNFQLLLCSSE
LSLHGGDPPSSVSFARDASNLSLSNGYTFFAHLQLCRAYAAVGNHKNLSLEFTQCLNLRT
DYPVGWMSLMIIESLHRPQNTLRLSDNGFRDSIKENEESENSWLAVYSLFCGLVSLSAQD
FLRAEEFLTEACSLKATESCIFLCHGAVCMALGKENCNSHYLTMGIKSLRKAQMISSIQL
PYISLLLAQAEASLGSKLIWKRSLPSEWYSWSPEAMPAEIYFQMHLLALGNQDLSGPDYG
DSLHWALRAIHLNPSCVKYWKILRKLSL
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaggaatatagcaacattgacttgaaactcttagaagaactagttcaatctaat
ccagatgatccttcccaccatttcaatctcgggaaatgtttgtgggaaaaaggaatagaa
tggagggaaaaagcagcagaacgattcttgatggcggcaaaattaaatccccaaaatggg
gaagccttcaaatatttagggcattattacagttgtttttgtatggatacccacagatct
ctcaaatgctaccagcgcgctgtctctcttaatgctgatgatgctcagtccggggaagca
ttgtgtaatttgttggacgtacaaagtaaggaaagtttggaggttgctatatgtagagag
gcatctggcaagtcgccccgtgctttttgggctttctccagattaggttttctgctgatc
catcaaaacaagtggtccgaagcaatccaaagtcttcagcatgctatcagaggctatcca
tccagtgctgatctctgggaagcgttaggtcttgcctatcaacgacttggcatgtataca
gctgctattaagtcttatgggagggcaatggaattggaaacttcaagagccttcgctatg
attgagactggaaatatttttttgatgctgggttcatatagaaagggagtagagcaattt
caacatgctctaaagatatggcctcaaaatttaggtgcacaatatgggcttgcgtctggg
cttcttgcttcggcacaagaatgcagtaaacaaggtgcattttcatgggccacgtctctg
ttagaggaggcatctgaaattgcaaaagcttgtgctattgtggctggtaatatgttctgt
gtatggaagctccatgctgatatccagcttacatatgcaaaatgctttccatggacagag
ggggatgatgtgaagggtgaggaagccttcaatcgatcacttctctcctggaaaaagaaa
cgtcgtttagctgctgtatcagcaaatcgttcctatcaacgtgctttgcacttagttcca
tggcaagcgaatatctatatggatattgctgtgaccgtagatcttatgtgctcattacag
agttatgaagatggctttagattctggaagttaactgagaagatgttgttaggaagttta
ctgcttgaaggtgacaatcatgaattctggatggcattgggttgtatgtctgataataaa
gcattgaaacaacatgcctttatccgagggttgcatttggatgtgtctcttgcttctgca
tgggcatatctggggaagatatacaaagaagagggtaaaagccagttgggtagacaagct
tttgacagggctcggagtatagatccatcgcttgcattgccatgggctggcatgtcatca
gatatacttactcaggagcctacatcagatgaggcttatgaaagctgcctacgagctgtc
caaataatgccttttgctgagtttcaaattggtcttgcaaaactagctctacgttcaaat
cacttgttatctccagaggtgtatggagctatcaagcaagctttgcaatgcgctccttgg
tattctgaatcccataatcttaatgggctgatttcagaggcgcgacatgattatgagtca
gctgttgcttcttatcggctggcacattatgcattgaagacttctactttgcccttgtct
cactctcaatctcattttgttgatatatcagttaatctgtccagggcactttgcaaggtg
ggatatgtgcaggatgctgtgcaagaattagaagatctgaagggaggaggtttgcttaat
attgaaggccttcaaatatatgcttttgcattatgggaacttggacagcatgatcgggcc
ctattggctattagggagctggctaagtgtattccaacaatgaaactgtcctctgcagtg
acttcaatttgtttgatatgtagtcttcagtattccatttctggggcaggatcaaccatc
aatagcattttgaaaatgcctaggaagctcttgcagagtacaaaagttagtttcatcata
tcagctatagatgctgtccatcagagctatcagttgcaggctcttgtctcaagtactcgc
tattccctttcatcacaggaagagattatggaaatgcatcttctaattgcactaagtaaa
ctaatgagaagtggacaacattctctcagtatgcaaaatggcattgatcatcttaggaag
gcattgcatatgtatcccaatgggtcttctttgagaaatatgcttgggtatttcttgtta
tctcgaaaacaaaggggaaatgaccatgttgtaaggaggtgctgtgttgtagctgctttt
gacccaataaaacaagactttagatcttcacatgaaattattggtgctgaagctgttgct
tgcctggctacttcgagctgcaagtcaaatttcttacttccaacttgtatataccagagt
gcccaaagtgtatcaatattggggctgatgcagagatggtttcaccgagaaccttggaac
cataacacaagatacttgctagtacttggtcttctacaaatagcacgccaaacaaaatat
ccacaacatcttatgagtgctctgaagcgaatgactaatgcagctctcactagtcaatta
tttgtggagaacacatttgaaagatataaaaattttcagctgcttctgtgttcctctgag
ctcagtttgcatggtggagatccaccgagctctgtgtcttttgcaagggatgcttcaaac
ctttctctttctaatggctatacgttttttgctcatttgcaactatgccgtgcttatgct
gctgtgggtaatcataaaaatcttagtttagagttcacccagtgcttgaatcttagaaca
gactatccagttggttggatgagtcttatgattattgagtctctccatagaccccagaat
actttgagattgtcagataacggctttcgagatagtattaaagagaacgaggaatctgag
aactcatggttagctgtgtacagtttattctgtggtttagtttctctatcagctcaagat
tttctgcgtgcagaggagttccttactgaagcttgttcattgaaagctactgagagctgc
atcttcttatgtcatggtgctgtttgcatggcacttggaaaagagaattgtaactctcac
tatctaacaatgggtatcaagagtcttcgaaaagctcaaatgatttcctccattcagttg
ccctatatatcccttttattggctcaagcagaggcaagccttggatcaaaactgatctgg
aaaagaagtcttccttctgaatggtactcttggtcaccagaggcaatgccggcagaaatc
tattttcaaatgcatctgcttgcacttgggaatcaagacttgtctggtccagattacggc
gactcactccattgggctcttcgagctattcacttgaatccttcttgcgtgaaatattgg
aaaatcctacgaaagctttccttgtaa
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integrated database retrieval system
