Amaranthus tricolor (tampala): 130802365
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Entry
130802365 CDS
T09367
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
130802365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130802365
Enzymes [BR:
atri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
130802365
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
130802365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Raftlin
Motif
Other DBs
NCBI-GeneID:
130802365
NCBI-ProteinID:
XP_057522323
LinkDB
All DBs
Position
16:10493186..10536910
Genome browser
AA seq
1662 aa
AA seq
DB search
MALAHEFATGTVEAVNFGVMTDEEVRKLSVVKITNSNLLNAVGRPEPGGLYDPALGPMND
HIPCITCGLRSFYCPGHFGHIDLVSLVYHPLLFNMLYRLLQNTCLACYHFKASREEVEMC
ISKLELIMKGDVTKARMLDSALSEHPDDSGDNLHSSGHSNNGKHNDNNNEKGWTSFQLTE
AHSVLNRFLKKRSGKCSCGAKNPAITKPTVGWIYMGGLSENKIKENIIRGHKLDGPLADE
DADKTLSEVEDFECRNAGPGASKNRRIKKDDVQLEFMKWKEARYLLPTEVRKILELLWQN
EARLCSFICDIQQRHQNTQRKSAFMMFFLKALLVPPTKFRPPAKGGELVMEHPQTISLGK
LLDSNKSLANAYENKAEQKAERTFIISRWMNLQQSVNVHFDSKNATGQSETTSGICQLLE
KKEGVFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVFALRLTYPERVTPWNVTNLRH
AIVNGPEIHPGATLYVDKTSTTKLASSRKSRISVARRLSSSRGVATQAGKTFCNEYEGKV
VYRHLRNGDIVLVNRQPTLHKPSIIALKVRVLPGERTIRFHYANCDSFNADFDGDEINVH
FPQDEISRAEAYNIVNADNQYIVPTRGDPKRALIQDHIVGAVLLSKRDTFLTLEEFNGLL
YMSGVCSYGGSSLNTKSGKKISVVDSETFIQAHPPSIIRPQILWTGKQVITAILNHITRG
YSPFTVKKRAKIAREYFGRDESKKNDERLNTIKGISQKKKNRLSSRKMIVNDLRTSIKHN
MDEDVVFVYKNELVQGVIDKEQFGKFGLVHTVQEMYGFSAAGNLLSVLSRVLTAFLQMHG
FTCGVHDLLLVPSYDKERKKLLELCLNCGEDVHQQFIGHEKDHLGFTELQTEIEKAIRHN
GESAIALLDGMMRSKLNTLNSAVTKLFPEGLIKPFRKNCLSLMTLSGAKGGAFNFQQISL
LLGQQELEGKRVPRMVSGKTLPCFVPWDSSARAGGFISDRYLTGLRPQEFYFHCMAGREG
LVDTAVKTSRSGYLQRCLIKNLECLSVQYDYTVRDADGSIIQFRYGEDGVDIHQKNYMQE
FEALALNQPLIVSKNPPIKNGCVSKYIEEANDIPNQLSKEAMEFLNNHAEAMNLPFRCPE
DHANFLKVVKNKYYSSLAQPGEPVGIIAAQSVGEPSTQMTLNTFHHAGRGEMNVTLGIPR
LQEILMTASVFIKTPTMTCPLLKCKTKDDAEQLAAKLKRITVADLIENMEVSIVPFSIEK
NEILSIYKLKIKLYDPKLYPPHIDLTLEDCQRALLNEYLDELETAIKNHLLLLSRIAGIK
SVAQLKGSDEMDGDDSENKSRPDDDDDGDSDAGNDDGADDLGVRDQKRKQQGTDEIDYED
DSEEEDEERTPVAESQHELEQDENEDEEENMEEDMPKTSSDLNSEEEKVKPQAKLRNKSD
GDITVHVACEGLYFEVHFNFTNEPHILLAQIAEKAAKKVYVKSAGKIEQCKVVELHLDDS
GKGGIPMLRKGKESRLALQTAGVDFKAFWDMQDELDIRFVSSNDINSMLNTYGIEAARAT
IVTEIFTVFGHYGVTVDIRHLTLIADYMTQTGGYRPMSRSGGIAESISTFSKMSYETASK
FLTDAAIRGDVDNLETPSARICLGLPAKVGTGCFDLMQDLDV
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atggccttagcgcatgagtttgcaacgggtacggtggaggcggtgaattttggtgtaatg
acagatgaagaagtcaggaaacttagtgttgttaaaattacgaacagtaatttgttgaat
gctgttggccgacctgagcctggtggtctttatgatcctgctttaggtccaatgaacgat
catattccttgcataacatgtggcctgcgttccttttattgccccggacattttggtcat
attgatcttgtgtcattggtttaccaccctctactgttcaatatgctctatcgtcttctg
cagaatacgtgtttggcatgctaccattttaaggcatctcgggaggaggttgagatgtgc
atttctaaattggaactcataatgaagggtgatgttactaaggctagaatgttagactct
gctttaagtgagcatcctgatgatagtggtgacaacctccattcgagtgggcactccaat
aatggcaaacataatgataataataatgaaaagggttggacctcttttcagcttacagaa
gcacactcagttctaaatagattcttgaagaaaagaagtgggaaatgcagttgtggggcg
aagaatcctgctattactaaacctaccgtaggttggatttacatgggtggcctgagtgaa
aacaaaataaaagaaaatatcatccgagggcacaagttggatggacctttagccgacgaa
gatgctgacaagactctgtctgaggtagaagattttgaatgccgtaatgctggaccaggg
gcatctaaaaatcggaggattaagaaagatgacgtccagttggaattcatgaagtggaaa
gaagcacgatatctcttaccaacagaagtcagaaagatcctagagctgctatggcaaaat
gaggctcgattatgctcatttatatgtgatatccagcaacgtcaccaaaatactcagaga
aagtcagcttttatgatgttcttcttaaaagctcttcttgtacctccaacgaagtttcgt
cctcccgccaagggaggtgaattagtgatggagcatccacaaaccatttcattgggcaag
cttttggattctaataaatccttggctaatgcttatgagaataaagctgaacagaaagct
gagcgcacctttattattagtaggtggatgaatcttcaacaatctgttaatgttcatttt
gatagcaagaatgcaactggccaaagtgagacaacttctggaatatgtcagttgctggaa
aaaaaggagggtgtatttcggcagaaaatgatggggaagcgagttaattatgcatgtcgt
tctgtaatatcacctgatccttatttagctgtcaatgagatcgggattccccctgttttt
gctttgagattgacctatcctgagagagttactccatggaatgtgacaaacttaagacat
gctattgttaatgggcccgagattcaccctggtgccacgctttatgttgataaaacgagc
acaacgaaattagcttctagcaggaaatctcgcatttctgtcgctagaagattatcttct
tcaagaggagttgcgacacaagctggaaagactttttgcaatgaatatgaagggaaggtt
gtataccgtcacttgcgcaacggggacatagttcttgttaatcgacagcccacactccat
aaaccgagtattattgcacttaaagttcgtgtcttgcctggtgaacggaccattcgtttt
cattatgcaaattgcgactcctttaatgctgattttgatggtgatgaaataaatgttcac
ttcccacaagatgagatatcccgtgctgaagcttacaacattgtaaatgctgataaccag
tatattgttcctactcgtggtgatcctaaaagagcattaattcaggatcacattgtgggt
gctgtacttctctcaaagagagacacttttcttacgttggaagaatttaatgggcttctt
tatatgtctggtgtgtgctcttatggtggatcctctctcaataccaaatccgggaagaaa
atatctgtagtggactcagaaacttttatacaggctcatccaccttctattattagaccg
cagatattatggacagggaagcaggtcattacggcaatcttgaatcatataacgagagga
tattcaccattcactgttaaaaagcgtgctaaaattgctcgagaatattttgggagggat
gaatctaagaagaatgatgaacgcctgaatacaattaaaggcatttctcaaaagaaaaag
aataggttgagttctaggaagatgattgttaatgatttgagaacaagcattaaacataac
atggatgaagatgttgtgtttgtttacaaaaatgagctagtccaaggggttattgacaag
gagcagtttggcaagtttggattagttcacactgtccaggagatgtatgggtttagtgct
gcgggcaatttgctttctgtattaagtcgtgttttgactgcttttctgcagatgcatggt
tttacttgtggagttcatgatctgcttctggtaccatcttatgacaaagagaggaaaaaa
ttacttgaattatgtcttaattgtggagaggatgttcaccagcaattcattggccatgag
aaagatcatttaggttttaccgagttacaaacagaaattgagaaagccattcgacataat
ggagaatctgcaatagcacttctagatggaatgatgagaagcaagcttaatacgttgaat
tcagctgttactaagctatttcctgaaggattaataaaacctttccgaaaaaactgtctt
tctcttatgacactgtctggagctaaaggtggcgcttttaacttccagcaaatctctctt
ttgttgggtcagcaagagttggaagggaagcgtgtacctcgtatggtctctggcaagaca
ttgccatgctttgtcccttgggacagttcagctcgagccggaggatttatcagtgatcgt
tatcttactggtcttcgcccccaagaattttacttccattgtatggctggtcgtgaagga
ctagttgataccgcggttaaaacatctcgaagtgggtacttgcaaaggtgcttaattaaa
aacctggagtgtctcagtgttcaatacgactacacagttcgtgatgcagatggttccatt
atacagttccgctatggagaagatggggttgacattcatcagaagaattatatgcaagaa
tttgaagcattagcattgaatcaaccgctgattgttagcaaaaatcctccaattaaaaat
ggatgtgtatccaagtacattgaagaagctaatgatattccaaatcaactttccaaggaa
gcgatggaattcttgaataatcatgcagaagcaatgaatcttccattcagatgcccagag
gaccatgccaactttcttaaagtagtcaaaaacaaatattacagtagtcttgcccagcct
ggggagcctgtgggaattattgccgctcaatcagttggagaaccatccactcaaatgaca
ttgaataccttccatcatgctggtcgaggagaaatgaatgtgacattaggaataccacgt
ttgcaagagatattaatgactgcttcagttttcattaaaactccaaccatgacatgccct
ttgctgaagtgcaaaacaaaggatgatgcagagcagcttgctgcaaagttgaagaggatt
acagttgctgatttgatagaaaacatggaagttagtattgtgccattttccattgagaag
aatgaaatcctcagtatttacaagcttaaaataaagctttatgatcctaagctttatcct
cctcacattgatctgacattagaagactgtcaaagagccctacttaatgaatatttggac
gaattggaaacggcaataaaaaatcatttgcttttactttcaagaatcgctggcatcaaa
tctgtagcccaactaaaaggttcagatgagatggatggcgatgactctgaaaacaagtca
cgaccagatgatgatgatgatggcgacagtgatgcgggcaatgatgatggggctgatgat
ttaggtgtaagggatcagaaaaggaagcagcaaggtacggatgagattgattatgaggat
gactctgaagaggaagatgaggaacggacgccggttgctgaaagtcagcatgagttggaa
caggatgaaaatgaagatgaagaagagaatatggaggaagacatgccaaaaacatcctct
gaccttaattcagaagaggaaaaggtgaaaccacaagcaaaactaagaaataagtcagat
ggtgatataacagtacatgtagcttgtgagggactatattttgaagttcattttaatttc
accaatgaaccccacatattgctggcacagatagctgagaaggcagctaagaaagtttat
gtcaagagtgctggcaagattgaacaatgtaaagtagtagagcttcatttggatgattct
ggtaagggtgggattccgatgcttagaaagggtaaggaatctcgtcttgctctacagact
gcaggtgtagattttaaagctttctgggatatgcaagatgagcttgacattaggttcgtt
agttcaaatgacataaactcgatgcttaatacttatgggatcgaagctgcaagagcaacc
atcgtaacagaaatctttacggtttttggccactatggagttacggtggacattcgacac
ttaaccttgattgctgattacatgacacaaacaggcgggtataggccgatgagcagaagc
ggtggtatagcggaatcgatttctacatttagcaagatgtcctatgaaactgcttccaag
ttccttacagatgcggctattcgtggagatgtagacaatttggaaactccttcggctagg
atttgtcttggcttgcccgctaaagttggcactggttgtttcgacttgatgcaggattta
gatgtatag
DBGET
integrated database retrieval system
