Amaranthus tricolor (tampala): 130803896
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Entry
130803896 CDS
T09367
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
atri01009
]
130803896
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130803896
03041 Spliceosome [BR:
atri03041
]
130803896
Protein phosphatases and associated proteins [BR:
atri01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130803896
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
130803896
Spliceosome [BR:
atri03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
130803896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
Radial_spoke_3
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
130803896
NCBI-ProteinID:
XP_057524106
LinkDB
All DBs
Position
17:complement(19786263..19794071)
Genome browser
AA seq
940 aa
AA seq
DB search
MSMELKNPSLKSGDLSPPDCVSDPDDKEISDDDDDDRNHKHRRREARSQSLERDPLEQSL
TQPYKKRNKTFDKGQSDSQSHYNPDRAFTKFEKRRHPGVNFSRFPGEHGFGRGRGRDFLH
DSRFGSVDVTSHIAHPGSIQPAMYAGRGLPNVLNTQSAPWTGFGLLPAIPNGAIDAINPL
GLPGLLRPQLNPPLNMGIQRQRCRDFEEKGYCLRGDMCPMEHAVNRIVVNDVQSLLQFNL
PVSLSSAPGLGTSNGSGFIPPVGVSSSTPINNRGLHSRTSKPAVDDESLAGAVNASAADV
YDPDQPLWNNVGHETSTLFGLQPTDFEESDPFVDTDLPDRVFCSSAAAMGSQSTSSSVWG
RLNHSKNKVEPKEKLDSKTKPSEYPESKLKEIREAPCAVQGTSHLSKQNNGGPIDAKVVG
STSKLQNDAGANLRKSSQKAQRTLFVNCVPLKDNKKENLLSHFRKFGEVIDIYIPANSER
AFVQFSTREEAERALKAPDAVMGSRFIKVWWANRDSVPDEGTNSWNNVIKLQGIPSASGL
HHMATANKGKNNLQQGTSKVAVPKPSDGHTNFSNDLKPVAANSPKGQPPAPKKIDTLVLL
KEQLRKKQEMLEQKRNAFRRELDKLEKQATGAKGEVPSGQASKKQKVETSADVTGKANTK
SPNANISTQSLQADMVADKMLTSDNFTSQISRTISAAELPDSPKLKQTVRSLATSATSFS
ANRYKLDNRPTMFRISAPLPFDLANVAALKEHFSVYGVVCNVEIEDSGEELSPKGHKDSE
AMENCSARVSFANRQSAERAFVNGKSWQGYTLQFAWVPSSIPTTSLSSGESSAFKATQNA
EVQSKDKTKHNSSRSGLSVKESNSSPCKSSNELAADIKRDSIFEAQSPDNSASYIPLEAG
EPGFQDSDLPEEEDSTVDDDTKMDEDLRVSPKFRDEEKVA
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgagtatggaactgaaaaacccgtccctgaaatctggcgacctttctcctcctgattgt
gtgagtgatccagatgacaaggaaattagcgatgatgatgatgatgatcgcaatcacaag
catcgtagacgggaggctaggtctcagtctttggagagggatccattagaacaatctttg
acacaaccctacaaaaagcggaacaagacatttgataaagggcagagtgattcccagtct
cactataaccctgatagggcctttacgaaatttgaaaagaggaggcatcctggagtaaat
ttctcgcggtttcctggtgagcatggctttggcagaggaagaggtagagacttcctacat
gattcacggtttggttctgttgatgttacttcccatatagctcatcctggatctattcaa
cctgctatgtatgctggaagagggttgcctaatgtattaaatacacaaagtgctccttgg
actggttttggactacttcctgctattccaaatggggcaatagatgctataaatccactt
ggcctgccaggactcctcagaccacagttgaatcctccactcaacatgggtattcagcgt
caacgttgtagggactttgaggaaaagggatattgtttgagaggtgatatgtgcccaatg
gaacatgctgtcaatcgtattgttgttaatgatgtgcagagcttgttgcaatttaatctc
ccggtgtcgctttcaagtgcgcctgggctgggtacatctaatggaagtgggtttattcca
cccgttggtgtttcttccagtacaccaataaataatcgaggtttacatagtagaacaagc
aagcctgctgtggatgatgagagcttagctggtgctgttaatgctagtgcagctgatgtt
tatgaccctgatcagcctttgtggaataatgttggtcatgaaacatcaacattgtttgga
ttgcagccaaccgactttgaagaatctgatccctttgttgacactgacctccctgatcgt
gtattctgtagtagtgcagcagctatgggttcacaaagcacaagctcatctgtttgggga
cgacttaatcattcaaagaataaggtggaacctaaagagaagttagactctaagacaaag
ccgtcagagtatccggagagtaaattaaaagagattcgtgaagcaccttgtgccgtccaa
gggacatcccatctaagcaagcaaaacaatggagggccaattgatgctaaagttgttggt
tcaacatcgaaactgcaaaatgatgcaggggctaatcttaggaaatcttcccaaaaggca
caacgtactctatttgttaattgcgttccgctgaaggacaacaaaaaagaaaaccttctc
tctcatttcagaaaatttggagaagtaattgatatctacatccctgcgaatagtgaacga
gcttttgtgcagttctccacaagggaagaggcagagagagcactgaaggcacctgatgct
gtaatgggcagtcgttttattaaggtatggtgggcaaacagggatagcgtacccgatgag
ggtacaaacagttggaacaatgtgataaagctccaaggtattccatctgcttctggtttg
catcatatggctactgcaaataaaggaaaaaataatcttcaacaaggtacttcgaaagtg
gctgtgcctaaaccttctgatggacacacaaattttagcaatgacttaaaacctgttgct
gcaaacagtcctaagggacaacctccagcaccaaaaaagatagacactttagtgcttttg
aaagagcagctccgtaagaagcaggagatgctggaacagaagcggaatgcatttcgccgg
gaattggataaacttgaaaagcaagctacaggagcgaagggtgaagtgccttctgggcag
gcttcaaagaagcaaaaggttgaaacgtcagctgatgtgacaggcaaggcaaacaccaag
tctccaaatgccaatatttctacgcagtcattgcaggctgatatggtagcagataagatg
ctaacttcagacaactttacatctcagatatccagaacaatttcagctgctgaactgccg
gactctccaaagttaaagcagactgttcgttcattggcaacttcagcaacttctttttct
gcgaatagatacaaattggataacaggccgacaatgtttagaatcagtgcacctttacca
tttgacttggcaaatgttgctgctttaaaggaacacttctcagtatatggtgttgtatgt
aatgtggagatagaagactctggtgaggaattaagtcctaaaggccacaaagattccgag
gcaatggagaactgttctgctcgtgtaagctttgcaaaccgtcaatctgctgaaagggca
ttcgtgaacggtaaatcttggcagggatacacgttacagtttgcttgggtaccttcgagt
attcccactaccagcctaagtagcggcgaaagttctgcttttaaagcaactcaaaatgct
gaagttcagtccaaggataagacgaaacataatagttcccggtctggattgagtgtcaaa
gaaagtaactcttctccttgcaagtcatcaaatgaacttgctgctgatatcaaaagggat
tccatttttgaagctcaatccccagataactcggcaagttatatacctctagaagctggt
gaaccaggatttcaggactcggatctgccggaggaagaagatagcactgtggatgatgat
acgaagatggatgaagatttgagagtcagtccgaaatttcgtgatgaagagaaagttgcc
taa
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