Amaranthus tricolor (tampala): 130809913
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Entry
130809913 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130809913 isoform X1
KO
K12589
exosome complex component RRP42
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130809913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130809913
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
130809913
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
130809913
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Vert_HS_TF
Motif
Other DBs
NCBI-GeneID:
130809913
NCBI-ProteinID:
XP_057531752
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All DBs
Position
4:21639571..21662568
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AA seq
289 aa
AA seq
DB search
MVELSRGEKNFIRGGIAQDLRCDGRKRLSYRPIHVDTGVIPQADGSARVRIGGTYVIASV
KAELGRPSSSQPNKGKVSIHIDCSATAAPIFQGKGGEALSTELASDLQRCLLGGKSGEGA
GIDLSSLSIVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVIAADPTS
ASDQPEVDVSDEEFLQFDTSAVPVIITLTKVGNHYIVDANLEEESQMSSAMSISVNRKGH
ICGLTKRGGAGVDPSVLLDMISVAMQVSDKFMNKLDSEIAAAEAREGES
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atggtggaactatcaagaggggaaaagaacttcatacgaggtgggattgctcaagatctt
cgttgtgatggtcgaaagcggttgtcttatcgaccaattcatgttgataccggcgtcatt
ccacaggcagatggttcagctagagtacggattgggggaacatatgttattgctagtgtc
aaggctgaattaggaagacccagttcatctcaaccaaataaaggaaaggtttctatacat
attgattgtagtgcaactgcagcacctatattccagggtaaagggggtgaagcattatct
actgaacttgctagtgatctccagcgctgcctcttgggtggtaaaagtggggaaggagct
ggaattgatctttcatctctatctattgtggaaggaaagatttgttgggatctctatatt
gatggccttgtagttagctcagatgggaatttactggatgccttaggtgcagcaataaag
gctgctttgagtaatactggcattccaaaagttaatgtcattgctgctgatccaacatct
gccagtgatcaacctgaagttgatgttagtgatgaagaatttctgcagtttgacacttct
gccgtcccggttataattacgttgaccaaggtaggaaatcactacatagttgatgcaaat
ctggaggaggaatctcaaatgagttcagcaatgtctatctctgtcaaccggaagggccat
atatgtggtctcactaagcgtgggggtgcaggggtggatccaagtgtgttgcttgacatg
atctcagtagctatgcaagtgagcgacaaatttatgaacaaattagactcggagattgct
gctgcagaggctcgtgagggagaatcttga
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