Amaranthus tricolor (tampala): 130810285
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Entry
130810285 CDS
T09367
Name
(RefSeq) serine/arginine-rich splicing factor SR45a
KO
K12897
transformer-2 protein
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130810285
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
atri01009
]
130810285
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atri03041
]
130810285
Protein phosphatases and associated proteins [BR:
atri01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130810285
Spliceosome [BR:
atri03041
]
Common components
Common spliceosomal components
SR proteins
130810285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_DEAH11
SDP_N
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
130810285
NCBI-ProteinID:
XP_057532272
LinkDB
All DBs
Position
4:complement(32430630..32436370)
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AA seq
226 aa
AA seq
DB search
MADSHRNRYSRSPSPRKVRSRSQSRSRSRSRSMSPPRYRSRSRSRSRSGSHSRVERDESN
PGNTLFVTGLSSRVTERELEDFFSREGKVSSVFLVVEPRTRVSRGFAFVTMSSIEDADRC
IKYLNQSVLEGRYITVEKSRRKRPRTPTPGHYLGIGTSRRRYRGGYGRDDYTHRRSPRRS
PYRGGRGYSPRRSPYAERSKRYRSRSYSPYGSPDRGYGRRSGVYAR
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atggctgattctcaccgtaacaggtattcgaggtctccatcacctcgaaaggttagatca
aggtcccaatctaggtctaggtcgaggtctagatcaatgtctcctccaagataccgttcc
cgctctcgttccaggtcaaggtccggaagtcatagcagagttgagagggatgaatcgaat
cctggaaacacactttttgtgactggtctctcatccagagttacagaaagagaacttgaa
gacttcttttccagggagggaaaggtgagctcagtgtttttggttgtggagccacgtacg
cgcgtatcgcgaggttttgcttttgtaaccatgagcagtattgaagatgctgatcggtgc
atcaaataccttaatcaatctgttcttgaaggtcgatacatcactgttgagaagtcgagg
aggaaacggccaagaacaccgacacctgggcattatcttggcattggcacgtcccgtcgc
agataccgtggtgggtatggacgtgatgactacactcataggagatcaccaagacgttca
ccataccgtggtggtcgaggctattctcctcgtcgttctccttacgctgaaaggtcaaag
aggtaccgatcaaggtcctactctccttatggaagcccagacagaggatatggtcgtcga
tctggtgtctatgccagataa
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