Aegilops tauschii (wheat D): 109772718
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Entry
109772718 CDS
T04345
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03013
Nucleocytoplasmic transport
ats03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109772718
03015 mRNA surveillance pathway
109772718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ats03019
]
109772718
Messenger RNA biogenesis [BR:
ats03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109772718
mRNA cycle factors
P-body specific factors
109772718
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
109772718
NCBI-ProteinID:
XP_020187001
UniProt:
A0A453C1H5
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Position
2:complement(397303274..397312152)
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AA seq
509 aa
AA seq
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MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWACFRPGNASQKNHRYSRLYLNF
KSPEDVVEFAEFFNGHVFVNEKGAQFKALVEYAPSQQVPKSNIKKDARQGTITKDPEYLE
FLELISKPTEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRSVSSR
LSRKVAGVVTSSSSPSKRSSERRRASTSTQYVVRDNAKEKPTYILAPKRDDHTHREKIIA
GTSDATSGGPSGSAQVIDGKKDKIVLLKGRARVDSNISDSSTPQQSVPPSRNTPPSTNRQ
DQRNEASGRIIKTILSNKEGRHAIASSQHEQEGHIISAEKDKRPPRAPNSRSTVKDQTVE
NAEKNHYDDKHNHLHGSGPIGEKVERHARNRDRPDRGVWAPRRYDKSASGGSTQASSSEF
PLMQSHSMDNFSQQVDGHGERKIDTRSPGGRGGLVENGNRHANRRGPPRGSKEMEIPPIT
SDGKPSKRGPASYVAHERQVWVQKSSSGS
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccggcgcaccgcacgaaggtggtgctcaggcggctgccgccggcgattgcg
cagcaggccgtcgtggaccaggttgacgcgcgcttcgctgggcggtatgactgggcctgc
ttccgccccggtaatgccagccaaaagaatcatagatattctcgtctctaccttaacttc
aagagcccagaagatgttgttgagtttgctgagttcttcaatgggcatgtatttgtgaat
gaaaagggtgctcaatttaaagctcttgtggaatatgcaccatcacaacaggttccgaag
tcaaatatcaagaaagatgctcgtcaaggaactataacaaaagatccagaatacttggaa
tttcttgagcttatatcaaagcctactgagcatttgccaagtgctgaaattcagcttgaa
aggaaagaagccgaaagagcagctgctggaaaggagccccctgttgtgacacctttaatg
gtttatgttcgtcagcaaagggcggctaagagtatggctcagaggtctgtaagtagtaga
ctaagcagaaaagttgcaggcgtggtaactagtagttctagtccatctaaaaggtcttct
gaaaggcgcagggcctccacttcaacgcagtatgttgtgcgagacaatgctaaggagaag
ccgacttacatcttagcgccaaagagagatgatcatacacacagagagaaaatcattgct
ggaacttcagatgctacaagcggtgggccatctggatctgctcaggttatcgacggtaaa
aaggacaaaattgtccttctgaaaggaagagcgagggttgattccaatatatctgatagc
tcaaccccgcagcagtctgtgccgccttcgagaaatacacccccatcaactaatagacaa
gaccagcgaaatgaggccagtggcagaattatcaagactatactttcaaacaaggaagga
cgccatgcaatagcatcatctcaacatgagcaagaaggtcacataattagtgccgagaag
gataagaggccaccacgggctccgaactcgcgttccactgtaaaagatcagactgttgaa
aatgctgagaaaaaccactatgatgacaagcataatcatctgcatggttctggacccatt
ggtgagaaggttgaaagacatgccagaaatagagataggcctgaccgaggtgtttgggcc
cctcgtcgctatgacaagtctgcatcaggaggcagtacgcaagcctcatcatctgagttc
ccgctaatgcagtcacactctatggacaatttctctcagcaagtagatggccatggagag
agaaaaatagacacaaggagtcctggtggccgtggtggccttgtggagaatggaaacagg
catgccaaccgccgtggtccgccacgtgggtcgaaggagatggaaatccctcctattaca
tctgatggaaagccttcaaagaggggccctgctagctatgtggctcatgagagacaagta
tgggttcaaaagtcaagttcaggatcgtga
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