Agrobacterium fabrum: Atu1956
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Entry
Atu1956 CDS
T00070
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
atu
Agrobacterium fabrum
Pathway
atu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Atu1956 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atu03021
]
Atu1956 (rpoB)
03400 DNA repair and recombination proteins [BR:
atu03400
]
Atu1956 (rpoB)
Enzymes [BR:
atu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Atu1956 (rpoB)
Transcription machinery [BR:
atu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Atu1956 (rpoB)
DNA repair and recombination proteins [BR:
atu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Atu1956 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
AAK87716
UniProt:
Q8UE08
LinkDB
All DBs
Position
circular:complement(1927198..1931334)
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFK
SVFPITDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLLMALGMDGEEILSTFYTKATYER
SGDGWRIPFQPEALKNAKVITDMIDADTGEVVVEGGKKLTPRLIRQLVDKGLKALKATDE
DLYGNYLAEDIVNYSTGEIYLEAGDEIDEKTLGLILQSGFDEIPVLNIDHVNVGAYIRNT
LSADKNQNRQEALFDIYRVMRPGEPPTMDSAEAMFNSLFFDAERYDLSAVGRVKMNMRLD
LDAEDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIIDGKVTTDVIYLSAMEEAKYYVAQANAELDGEGAFTEEFVVCRHSGEVMLAPRDNI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVAR
DSGAAIAARRGGVVDQVDATRIVIRATEDLDAGKSGVDIYRLQKFQRSNQNTCVNQRPLV
SVGDAISKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLIDMLRGHVSIAGPKGFKKGVELSNAVVSEYPRSQWW
MFAVEDEKAQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLA
WACAGMGKKIGEMLEEYRKTMDISELRSELTEIYASEANDEVQRFDDDSLVKLAEEAKRG
VSIATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVGYMYMIKLNHLV
DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA
GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKIENQSEDQLPDAAE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgtttaacggtcgcaggcgcgtacgcaagtttttcggcaaaatt
ccagaagtagcggaaatgccgaacctcatcgaggttcagaaggcttcgtatgaccagttt
ctcatggttgacgagcccaagggtggccgtcccgacgagggattgaatgccgtattcaaa
tccgtattcccgatcaccgatttttccggcgcctccatgctcgaattcgtgtcttacgaa
ttcgaagcgccgaagttcgacgtcgaggaatgccgtcagcgcgatctgacctatgcagcg
ccgctgaaggtgacgctgcgcctcatcgtgttcgatatcgacgaagataccggcgcgaag
tccatcaaggacatcaaggaacagtccgtctacatgggcgacatgccgctcatgaccaat
aacggcacgttcatcgtcaacggcaccgagcgcgtcatcgtttcgcagatgcaccgttcc
ccgggcgtgttcttcgaccacgacaagggcaaaagccattcttccggcaagctgcttttt
gctgcccgcgtgatcccgtatcgcggttcttggctcgacatcgagttcgacgccaaggac
atcgtctatgcgcgtatcgaccgtcgccgcaagctgcccgtgacctcgctgctgatggcg
ctcggcatggatggcgaagaaatcctgtcgaccttctacaccaaggcgacctatgagcgc
tccggcgatggctggcgcattccgttccagcctgaagcgctgaagaatgccaaggtcatc
accgacatgatcgacgccgacaccggcgaagtcgttgtcgaaggtggcaagaagctgacc
ccgcgcctcatccgccagctcgtcgacaagggcctgaaggcgctgaaggcgaccgacgaa
gatctctacggcaactacctggccgaagacatcgtcaattactcgacgggtgagatctat
ctcgaagccggcgacgaaatcgacgagaagacgctcggcctcattctgcagtccggcttt
gacgagattccggtactcaacatcgaccacgtcaatgttggcgcctatatccgcaacacg
ctgtctgcggacaagaaccagaaccgccaggaagcgctgttcgacatctaccgcgtcatg
cgtcccggcgagccgccgaccatggattcggcggaggcgatgttcaactcgctgttcttc
gatgccgaacgttacgatctctcggctgttggccgcgtgaagatgaacatgcgtctcgac
ctcgacgcggaagacaccgtgcgcacgctgcgcaaggaagacatcctcgcggtcgtgaag
atgctggtcgaactgcgtgacggcaagggcgaaatcgacgacatcgacaacctcggcaac
cgccgtgtccgttctgtcggcgagctgatggaaaaccagtatcgtctggggcttctgcgc
atggaacgtgcgatcaaggaacgtatgtcctcgatcgaaatcgacaccgtgatgccgcag
gacctgatcaacgcgaagccggcagccgccgccgttcgcgaattcttcggttcctcgcag
ctgtcgcagttcatggaccaggtgaacccgctttcggaaatcacccacaagcgccgtctt
tcggctcttggaccgggtggtctgacccgtgagcgcgccggcttcgaagtccgcgacgtt
cacccgacccattacggccgtatttgcccgatcgaaacgcctgaaggcccgaacatcggt
ctgatcaactcgcttgcaacctttgcccgtgtgaacaagtacggctttatcgaaagcccg
taccgcaagatcatcgacggcaaggtgacaaccgacgtgatctacctctccgccatggaa
gaggccaagtactacgtcgcacaggccaatgccgaactcgatggcgaaggcgccttcacg
gaagagttcgttgtttgccgtcattcgggcgaagtcatgctcgcaccgcgcgacaacatc
aacctgatggacgtttcgccgaagcagctcgtttcggtcgcagcggctctcattccgttc
ctggaaaacgacgacgccaaccgcgctctcatgggctcgaacatgcagcgtcaggccgtt
ccgcttctgcgcgccgaggcaccgttcgtcggtaccggcatggagccgatcgttgcccgt
gactccggcgctgccattgcagcccgtcgtggcggtgttgtcgatcaggtggatgcgacc
cgtatcgttatccgggctacggaagatctcgatgccggcaaatccggtgttgatatctac
cgtctgcagaagttccagcgttcgaaccagaacacctgcgtcaaccagcgtccgctggtt
tccgtcggtgacgccatctccaagggtgacatcatcgcggacggtccgtcgaccgacctc
ggcgatctggcactcggccgtaacgcgctcgtcgcgttcatgccctggaatggctacaac
tacgaagactcgattctgatgtcggagcgtatcgtttccgacgacgtgttcacctccatc
cacatcgaagaattcgaagtgatggcgcgtgacacgaagcttggtccggaagaaatcacg
cgcgacattccgaacgtttcggaagaagcgctgaagaacctcgacgaagccggtatcgtc
tacatcggtgcggaagttcagccgggcgacatcctcgtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggtgaaaaggcttcc
gacgttcgcgacacgtccatgcgcatgcctccgggcacgttcggtacgatcgtggaagtc
cgcgtcttcaaccgtcacggtgtggagaaggacgagcgcgcgatggctatcgagcgcgaa
gagatcgagcgtctggcgaaggaccgcgacgacgagcaggcaattctcgaccgtaacgtc
tacggccgcctgatcgacatgctgcgtggccacgtttccatcgctggtccgaagggcttc
aagaagggcgtcgagctttccaacgccgtcgtctccgaatatccccgctcgcagtggtgg
atgttcgcggtcgaggacgagaaggcccagtccgaactggaagcacttcgcggccagtac
gacgaatccaagtcgcgccttgaacagcgcttcatggacaaggtcgaaaaggtccagcgc
ggcgatgaaatgcctccgggtgtcatgaagatggtcaaggtcttcgtcgctgtgaagcgc
aagatccagccgggcgacaagatggccggccgtcacggtaacaagggcgtcgtctcgcgt
atcgttccggtcgaggacatgccgttcctcgaagacggcacgcatgtcgacatctgcttg
aacccgcttggcgtgccttcgcgcatgaacgtcggccagatcctcgaaacccacctcgca
tgggcatgcgcaggcatgggcaagaagatcggcgagatgctcgaagagtatcgcaagacg
atggacatcagcgagcttcgtagcgagctgacggaaatctacgcgtccgaggctaatgat
gaggttcagcgtttcgatgacgactcgctggtgaagcttgccgaagaagccaagcgcggt
gtttccatcgcgaccccggttttcgacggtgcgcatgagcctgacgtcgccgcgatgctg
aagaaggcaggtctgcatgaatccggtcagtccgtcctttatgacggtcgtaccggtgag
ccgttcgaccgcaaggtcaccgtcggctacatgtacatgatcaagctgaaccaccttgtc
gacgacaagatccacgctcgctcgatcggtccttactcgctcgttacccagcagccgctg
ggcggcaaggcgcagttcggcggacagcgcttcggggaaatggaagtctgggctctggaa
gcatacggcgcggcttacacgctgcaggaaatgctcaccgtcaagtcggacgacgttgcc
ggccgcaccaaggtctacgaagcgatcgtccgtggcgacgacaccttcgaggccggtatc
cctgagagcttcaacgttctcgtcaaggaaatgcggtcgctcggtctgtcggtcgaactg
gagaactcgaagatcgagaaccagtccgaggaccagctgcccgacgcggcggaataa
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integrated database retrieval system
