KEGG   Aurantimonas sp. HBX-1: LXB15_08955
Entry
LXB15_08955       CDS       T07802                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
aub  Aurantimonas sp. HBX-1
Pathway
aub02024  Quorum sensing
aub03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aub00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LXB15_08955 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    LXB15_08955 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aub03019]
    LXB15_08955 (hfq)
   03036 Chromosome and associated proteins [BR:aub03036]
    LXB15_08955 (hfq)
Messenger RNA biogenesis [BR:aub03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     LXB15_08955 (hfq)
Chromosome and associated proteins [BR:aub03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    LXB15_08955 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: UIJ73732
LinkDB
Position
complement(1891057..1891305)
AA seq 82 aa
MPERTQNLQDLFLNTVRKQKISLTIFLVNGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHA
ISTIMPSQPVHMHDGGDDDRTD
NT seq 249 nt   +upstreamnt  +downstreamnt
atgccggaacggacgcaaaacctccaggacctcttcctcaacaccgtgcgcaagcagaag
atctcgctgaccatcttcctggtcaacggcgtcaaactgaccggcgtggtgacctccttc
gacaatttctgcgtcctgctgcgccgcgatggccattcccagctggtctacaagcacgcc
atttccaccatcatgccctcccagccggtccatatgcacgacggcggggacgacgacagg
accgactga

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