Aerococcus sp. Group 1: HMPREF9243_0413
Help
Entry
HMPREF9243_0413 CDS
T01447
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aur
Aerococcus sp. Group 1
Pathway
aur03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aur00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF9243_0413 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aur03021
]
HMPREF9243_0413 (rpoB)
03400 DNA repair and recombination proteins [BR:
aur03400
]
HMPREF9243_0413 (rpoB)
Enzymes [BR:
aur01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF9243_0413 (rpoB)
Transcription machinery [BR:
aur03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF9243_0413 (rpoB)
DNA repair and recombination proteins [BR:
aur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF9243_0413 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEA00440
LinkDB
All DBs
Position
409755..413357
Genome browser
AA seq
1200 aa
AA seq
DB search
MAGHNVEYGKHRVRRSYSRINEVLELPNLIEIQTESYRWLLDKGIREMFSDISPIEDHGG
KLALEFVDYSFQEPKYDMSESRQQDTNYAAPMYVKLRLINSETGEIKDQEVFFGDFPLMT
DSGTFIINGSERVIVSQLVRSPGVYYNDKVDKNGKLSYGATVIPNRGAWLEMETDAKDIS
YVRIDRTRKLQMTVLMRALGFGSDDQIRELFGDSETLSLTLEKDVHKNPSDSRTEEALKD
IYERLRPGEPKTAESSRNLLNTRFFDPRRYDLAAVGRYKINKKLDLKSRLYKQTLAENLV
DNETGEIVLEAGTVFTREVLDDISDKLDNGLGLVTVYPNDDAVITDPVDIQLIKIVAPKD
PERVVHVIGNAMQNSDYKSLTVADVLTAMNYFLNLYEGLGTTDDIDHLGNRRIRSVGELL
QNQLRIGLSRMERVVRERMSIQDIDTVTPQQLINIRPVVASIREFFGSSQLSQFMDQNNP
LSELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLATYAK
INDFGFIETPYRRVDWNTHKVTDKIDYLTADEEDRFVIAQGNTPLNEDGSFATDTIMARK
IEENIEVSPEEVDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLLNPHAP
LVGTGMEYKAAHDSGAAVTCKRAGVVDYVDAREIRVRTEEGALDKYELVKFYRSNASSCY
NQTPLVRKGDQVDKDEILANGPSMEGGELALGQNPIIAFMTWDGYNYEDAVVLSERLVKE
DVYTSIHIDELESEARDTKLGPEEITREIPNVGEDALRNLDENGIIRIGAEVTDGDILVG
KVTPKGVTELSPEEHLLHAIFGEKAREVRDTSLRVPHGGGGIVNDVKVFHRENGDELKPG
VSMMVRVYIIQKRKIQVGDKMAGRHGNKGVVSIVLPEEDMPYLPDGTPVDICLNPLGVPS
RMNIGQVLELHLGMAARNLGIHVATPVFDGAQDEDIWETVKEAGMAEDAKTVLYDGRTGE
PFDNRVSVGVMYYLKLSHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAAYTLQEILTYKSDDVVGRVQTYEAIVKGDPIPKPSVPESFRVLVKELQSLGLDIQV
LDESDKELDLRDEDPVQVTRRDYKENQEQEQEDEDKDKNQEEKQSEGNDEEIIAKKQANE
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggcaggacataatgttgaatacggcaaacaccgcgtacggcgttcttactcgcgcatc
aatgaagtgctcgagttgccaaacttgattgagattcaaaccgaatcttatcgttggtta
ttggataaggggattcgggaaatgtttagtgatatttcaccgattgaagaccacggaggc
aaattagccttagagttcgtggactattccttccaagaacctaaatatgatatgtctgaa
tcgcgtcaacaagacactaactatgcggcgccaatgtatgttaaattgcgtttaatcaat
agcgaaaccggtgaaattaaggaccaagaagttttctttggggacttcccattgatgact
gatagcgggaccttcattattaacggctctgaacgggttattgtttcgcaattggtccgt
tccccaggggtttactacaatgataaagtagacaaaaacgggaaactttcttatggagct
accgtgattcctaaccggggtgcctggttagaaatggaaaccgatgctaaagacatttcc
tatgtacggattgaccggacccgtaagctacaaatgactgtgttaatgcgggctctaggt
tttgggtctgatgaccaaatccgtgaactctttggtgacagtgaaaccctgagtttaacc
ttagaaaaagatgtccacaaaaacccatcggactcccggactgaagaagccttaaaagat
atttatgagcgcctccgtcctggtgaaccaaaaaccgctgaatcctcccgtaacttatta
aatacgcgtttcttcgacccacgtcgttatgacttggctgctgtcggacgctacaagatt
aataagaaattagacttgaaatcccgtctctataagcaaaccctggcagaaaacttggtt
gataatgagactggtgaaattgtcctggaagcagggaccgtcttcacccgtgaagtctta
gatgacattagtgacaagttagataatggcctcggtttagtgaccgtttatccaaatgat
gatgcagtgatcactgatcctgttgatatccaattaattaagattgtggcacctaaggac
ccagaacgtgtggttcatgtgatcggtaacgctatgcaaaattccgactacaagtcatta
accgttgctgacgtcttaaccgccatgaactatttcttgaacctctatgaaggcttaggg
actaccgacgatatcgaccacttaggtaaccgtcggattcgttctgtgggtgaattgtta
caaaaccaactccggatcggtttaagccggatggaacgggtggtaagagagagaatgtcg
atccaagacatcgatacggttaccccccaacaattgatcaatatccgtccagttgtggca
tcaattcgtgaattctttgggtcctcccaattgtcccaattcatggaccaaaacaaccca
ctttctgagttgacgcacaaacgtcgtctctcagccttggggcctggtggtttgactcgg
gaccgtgccggttacgaagtgcgtgacgttcactactctcactatggtcggatgtgtcca
attgaaacccctgaaggacctaacattgggctgatcaactccttggcgacttatgctaag
attaatgactttggtttcattgaaaccccataccgtcgggtagactggaatacccacaag
gttaccgataagattgactacctaacggcggatgaagaagaccgttttgttatcgctcaa
gggaacacgcctttaaatgaagatggttcttttgccaccgataccattatggcgcgtaag
attgaagaaaatattgaagtctctcctgaagaagtcgactacatggacgtttcccctaaa
caggtggtttctgtcgcaacagcatgtattcctttcttggaaaacgacgactccaaccgg
gccttgatgggggccaacatgcaacggcaagcggtgccgctcttaaaccctcatgcccct
ttagtagggaccgggatggaatataaggctgcccatgactctggggctgcagtgacctgt
aagcgggccggtgtggtggactatgtcgacgcgcgtgaaattcgcgttcggactgaagaa
ggcgccttagataagtatgaattagtgaaattctaccggtctaacgccagctcctgctat
aaccaaacgccattggtacgtaaaggtgaccaagttgataaggacgaaattctcgccaac
ggaccttctatggaaggtggggaattagccctcgggcaaaacccaatcatcgccttcatg
acctgggatggttataactatgaagatgcggttgttctttccgagcgtttggtgaaagaa
gacgtctatacttcaatccatattgatgaattggaatcagaagcccgtgacaccaaatta
gggccagaagaaatcacccgggaaattcctaacgtgggtgaagatgccctccgtaacctc
gatgaaaacgggattattcgtatcggtgctgaagtcactgatggcgacatcttagtgggt
aaggtaacccctaaaggtgtgactgaactcagtcctgaagaacacctactccatgccatc
tttggtgaaaaagcccgcgaagttcgtgatacttccttacgggtacctcatggtggtggc
ggaatcgttaatgacgtcaaagtcttccaccgggaaaatggggacgaactcaaacctggt
gtttccatgatggttcgggtttacattatccaaaaacgtaagatccaagttggggataaa
atggctggtcgtcacggtaacaagggggttgtctccattgtgttaccagaagaagacatg
ccttacttaccagatgggaccccagtcgatatctgcttgaacccattaggggtgccttcc
cggatgaacattggacaggtgttagaacttcacttagggatggctgcccggaacttaggt
atccacgtggcaacacctgtatttgatggggcccaagatgaagatatttgggaaaccgtt
aaagaagccggcatggctgaagatgctaagaccgtgctttacgacggtcggaccggtgaa
ccttttgataaccgcgtttctgtaggggtgatgtactacttgaaactctcccacatggtc
gatgacaagctccatgcccgttctattggaccttactccctagttacccaacaaccacta
ggtggtaaagcacagtttgggggacaacgtttcggggaaatggaagtttgggcactggaa
gcttacggtgctgcttacaccctacaagaaatccttacctataaatcagacgacgtggtt
ggccgggttcaaacctacgaagctatcgtaaaaggtgacccaattcctaaaccaagtgta
ccggaatccttccgcgtgctcgtcaaagagttacaatccctaggtttagacatccaagtc
ctcgatgaaagtgacaaggaacttgacttacgtgatgaagacccagtccaagtcacccgt
cgtgattacaaagaaaaccaagaacaagaacaagaagatgaagacaaggataagaaccaa
gaagaaaaacaaagcgaaggcaatgacgaagaaatcatcgccaaaaaacaagcaaatgaa
tag
DBGET
integrated database retrieval system
