Aurantimicrobium sp. INA4: AINA4_01630
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Entry
AINA4_01630 CDS
T10136
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aut Aurantimicrobium sp. INA4
Pathway
aut03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aut00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AINA4_01630 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aut03021
]
AINA4_01630 (rpoB)
03400 DNA repair and recombination proteins [BR:
aut03400
]
AINA4_01630 (rpoB)
Enzymes [BR:
aut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AINA4_01630 (rpoB)
Transcription machinery [BR:
aut03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AINA4_01630 (rpoB)
DNA repair and recombination proteins [BR:
aut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AINA4_01630 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BDU10242
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All DBs
Position
155659..159264
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AA seq
1201 aa
AA seq
DB search
MENSTSGPTLAGLIGFAIYPTPTTTMMVHDGPTEVISLAAARNAKDTKSIKNGRSASRLS
FAKITDTLTVPDLLALQTESFDWLVGNEHWQKRVEEAKKEGRQDLPSRTGLEEIFEEISP
IENLDETMQLSFTNPYLEPEKYSIFECKERGKTYAAPLYVEAEFMNHVTGEIKTQTVFMG
DFPLMTEKGTFIINGTERVVVSQLVRSPGVYFERAQEKTSDKDVYSARIIPSRGAWLEFE
IDKRDAVGVRIDRKRKQSVTVFLKALGLTSEEIATEFAGYDSILQTLEKDTILTKEDALR
DIYRKLRPGEQVAAEAARALLDNFYFSPKRYDLAKVGRYKINRKLGLEAPLTDSVLRVED
IIATIKYLVALHNDEKTFPGVRDGKKVDIRLDVDDIDHFGNRRIRAVGELIQNQVRTGLS
RMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFGTSQLSQFMDQNNPLAGLTHKRR
LSALGPGGLSRERAGVEVRDVHSSHYGRMCPIETPEGPNIGLIGSLASFARINAFGFIET
PYRRVVKGKVTEHIDYLTASEEDDFVVAQANAPLTKDSHFAEERVLVRRKGGEVELVPAA
EVDYMDVSPRQMVSVGTSLIPFLEHDDANRALMGANMQRQAVPLLRSESPLVGTGMENFA
AIDAGDVILANAAGVVSEVSADVVTVQLDAGGTEDYFLRKFDRSNQGTSYNHRVIVTAGE
RVEVGQVIADGPATENGELALGKNLLVAFMPWEGHNFEDAIILSQRLVQDDVLSSIHIEE
YDVDARDTKLGKEEITRDLPNVSPELIANLDERGIIRIGAEVRPGDILVGKVTPKGETEL
SAEERLLRAIFNEKSREVRDTSLKVPHGEAGTIIGVKVFDAENDEDELGSGVNQRVVVYI
AQKRKITEGDKLAGRHGNKGVIAKILPVEDMPFLEDGTPVDVVLNPLGIPGRMNFGQVLE
THLGWIAKQGWKVEGNPEWAANLPAEAFEAAPGTKVATPVFDGALEEEIAGLLDVTTPTR
DGQRLIGASGKARLFDGRSGEPFPEPISVGYMYILKLHHLVDDKIHARSTGPYSMITQQP
LGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDIVGRVKVYEAIVKGENIQEPG
IPESFRVLMKEMQSLGLNVEVLNEAGDVVSLRDADDEAYRAAEELGINISTRFESSSIDE
I
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
gtggagaactctacgagtggccccactttagcgggtctcatcgggtttgcaatttatccc
acaccaaccacaaccatgatggtccatgacggacccacggaggttatttccttggctgct
gcgcgcaacgcaaaagacaccaagtccatcaagaacggccgtagtgcatcgcgcttgtcg
ttcgcgaagattacggacactctgactgttcccgatcttctggcacttcagaccgagagc
tttgactggctcgtcggaaatgaacactggcagaagcgtgtggaggaagcaaagaaggaa
ggtcgccaggacctgccttcacgcactggtcttgaagagatctttgaagagatctctccc
atcgagaacctcgatgagaccatgcagctctctttcaccaacccctacctcgagcctgag
aagtactcgatcttcgagtgcaaggagcgtggcaagacctacgctgctcctctctatgtc
gaggctgagttcatgaaccacgtcacgggtgaaatcaagacccagaccgtgttcatgggt
gacttccccctcatgaccgaaaagggaaccttcatcattaacggcaccgagcgtgttgtt
gtgtctcagctggttcgttcacccggtgtgtacttcgagcgtgcacaggaaaagacctcc
gacaaggacgtctactccgcacgcatcattcctagccgtggcgcatggctcgaattcgaa
atcgacaagcgtgacgctgttggtgttcgtatcgaccgtaagcgtaagcagtctgtcacc
gtcttcctcaaggccctcggtctgaccagtgaagaaatcgcaaccgagtttgccggttac
gactccatcctgcagaccctggaaaaggacaccatcctcaccaaggaagacgcactacgc
gacatttaccgcaagctccgtccaggcgagcaggttgctgctgaagctgcacgtgccctg
ctggacaacttctacttcagccccaagcgttacgacctggccaaggttggtcgttacaag
atcaaccgcaagctcggtcttgaagctccgctgactgactctgttcttcgcgttgaagac
atcattgcaaccatcaagtacctggttgctctgcacaacgacgagaagaccttccccggt
gttcgcgatggcaagaaggttgacattcgtctcgacgtagacgacatcgaccacttcggt
aaccgtcgtatccgcgccgtcggtgagctcatccagaaccaggttcgtactggtctgtcc
cgtatggagcgcgttgtccgcgagcgtatgaccactcaggacattgaggcaattactcct
cagaccctgatcaacgtacgtcccgttgtggcagcaatcaaggagttcttcggaacctct
cagctgtcacagttcatggaccagaacaacccgcttgctggtttgacccacaagcgtcgt
ctgtccgctctgggccctggtggtctttctcgtgagcgtgcaggtgttgaggttcgtgac
gttcactcctctcactacggacgtatgtgtcctattgaaactcctgaaggtcccaacatt
ggtctgattggttcgctcgcatccttcgcgcgtatcaacgcctttggtttcattgagacc
ccctaccgccgcgtcgtcaagggcaaggtaaccgagcacatcgattacctcaccgcttcg
gaagaagatgacttcgttgtggcacaggcaaacgctccactaaccaaggacagccacttc
gctgaagagcgtgttctggttcgtcgtaagggtggcgaggttgaactcgttcctgcggct
gaggtggactacatggacgtgtctccacgtcagatggtgtctgttggtacctcgctgatt
ccattcctcgagcacgacgatgcaaaccgcgcacttatgggtgccaacatgcagcgtcag
gctgtgccactgctgcgcagcgaaagcccactggttggtaccggtatggaaaacttcgcc
gcaatcgatgctggtgacgtgatcctcgctaacgctgctggtgttgtctctgaggtatcg
gctgatgtcgtcaccgttcagctcgacgctggtggaaccgaggactacttcctgcgcaag
ttcgaccgctcgaaccagggcaccagctacaaccaccgtgtcatcgtgaccgctggtgag
cgtgttgaggtaggtcaggtcatcgctgatggtcctgccaccgaaaacggtgaattggct
ctgggtaagaacctacttgtggcattcatgccgtgggaaggtcataacttcgaggacgca
atcatcctctcccagcgtctggttcaggacgacgttctttcttcgattcacatcgaggaa
tatgacgttgatgctcgtgacaccaagctgggtaaggaagagatcactcgcgacctgccc
aacgtgtcccctgaattgatcgctaacctcgatgagcgcggcatcatccgtatcggtgct
gaggttcgccccggcgacatcctcgtcggtaaggtcactcctaagggtgagaccgagctt
tctgctgaagagcgcttgctgcgcgctatcttcaacgagaagagccgcgaagttcgcgac
acttcattgaaggtgcctcacggtgaagccggaaccatcattggtgtgaaggtattcgac
gcagagaacgacgaagacgagctcggctcgggcgtcaaccagcgcgttgttgtctacatc
gcccagaagcgtaagatcaccgaaggtgacaagcttgctggtcgtcacggaaacaagggt
gttatcgccaagatcctccccgttgaagacatgccattcctcgaagacggaactcctgtc
gacgtcgtactcaacccattgggtattcccggtcgtatgaacttcggtcaggttttggaa
acccacctcggctggatcgcgaagcagggttggaaggttgaaggcaacccagaatgggct
gcaaaccttcctgcagaagcattcgaggctgccccaggcaccaaggttgcaacccccgtg
ttcgacggtgctctcgaggaggaaatcgctggtctgctcgatgtgaccacacctactcgt
gatggacagcgcctcatcggtgcttccggtaaggcccgtctgttcgacggtcgttccggt
gagccattccctgagcccatctctgtgggttacatgtacatcctgaagctgcaccacctt
gtcgatgacaagattcacgcacgttcaacgggtccttactcgatgatcacgcagcagcct
cttggtggtaaggcacagttcggtggacagcgctttggtgagatggaggtgtgggcactg
gaagcttatggtgccgcttacgcacttcaggaacttctcaccatcaagtccgacgacatc
gtgggccgtgtcaaggtttacgaagccatcgtcaagggcgagaacatccaggagcccggt
atccccgagtcgttccgtgttctcatgaaggaaatgcagtccctcggtctcaacgttgag
gttctcaacgaagctggcgatgtcgtcagcctccgcgacgccgacgatgaggcataccgc
gccgctgaagagctcggtatcaacatctctacccgtttcgagtcttcgtccatcgacgag
atctaa
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