Actinotignum urinale: CJ184_004740
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Entry
CJ184_004740 CDS
T09101
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
auu
Actinotignum urinale
Pathway
auu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
auu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CJ184_004740 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
auu03021
]
CJ184_004740 (rpoB)
03400 DNA repair and recombination proteins [BR:
auu03400
]
CJ184_004740 (rpoB)
Enzymes [BR:
auu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CJ184_004740 (rpoB)
Transcription machinery [BR:
auu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CJ184_004740 (rpoB)
DNA repair and recombination proteins [BR:
auu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CJ184_004740 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
mTERF
Gal4_dimer
APP_E2
Motif
Other DBs
NCBI-ProteinID:
WIK58576
LinkDB
All DBs
Position
1140199..1143696
Genome browser
AA seq
1165 aa
AA seq
DB search
MAASRTYSLAVNHGKPIVDRVSFAKINEPLQVPNLLGLQTDSFGWLIGSEKWVAENPGTA
SGLEEIFDEISPIENTAQTMGLVLSAPHFEEPKYSILECRERDITYAAPLYVTAEFQNYE
TGEIKSQTTFIGDFPLMTDRGTFIVNGTERVVVSQLVRSPGVYFERTADKTSDKDIYNAK
IIPSRGAWLEFEIDKRDSVGVRVDRKRKQSVTVFLKALGMEESEIREVFADFPVLLKTLE
KDTVHTQEEALRDLYRKLRPGEPPTADAGRTLLNNFYFNTKRYDTAKVGRYKINKKLGLD
AENESRQLTLVDITATLRYLLALHQGMDRVNEMGEYAELVCTEGGTPVRVTTDDIDNFSN
RRVRAVGELIQNQVRTGLARLDRMVRERMTTQEVEAITPSSLINIRPIVASIKEFFGTSQ
LSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGPNIG
LIGSLASFARVNTFGFLETPYRRVVDGRVTDVIDYLQAGDEDNYNIAQAEAPIDENGNFL
EEEALVRVPGGEPALVPVEEVDYMDVSARQMVSIGTGMIPFLEHDDANRALMGANMQRQA
VPLIRPVSPYVGTGWEMRCAVDSGDVTTAAAPGVVTEVDSDAIHVEQDDGRHVIYKMSKF
ERSNPGNAINQRVLVDVGDRIEAGSLLADGAATEGGELALGQNLLVAFMSWNGYNYEDAI
ILSERCVRDDLLTSIHIEEHEVDARDTKLGPEEITRDIPNVSEEMISHLDEHGIIRIGAE
VRAGDILVGKITPKGETELTSEERLLRAIFGEKAKEVRDTSMRVPHGESGIVIGIRQFNK
ENNDELPSDVNETVRVYIAQRRKITVGDKMAGRHGNKGVISRILPIEDMPFLEDGTPVDI
ILNPLGVPGRMNLGQIYELHLGWIAKHGWDASAAREAGEKWAMSLPENAVKGKPGQRVAT
PVFDGLTSDELEGLIKSVLPNEDGDHVLNEFGKARLFDGRSGEPFPEPISVGYMYMLKLH
HLVDDKIHARSTGPYSMVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTVKSD
DTVGRVKVYEAIVKGDNIPEPGIPESFKVLMQEMRSLCLNLEALDAGGAVIELQETEEER
FRGNTNKEVPAMPTGLEDLSTGADF
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
ttggctgcttcgcgcacatactcgctcgccgttaaccacggcaagccgattgttgaccgc
gtctcgtttgcaaaaatcaatgaaccgctccaggttcccaaccttttaggtttgcagaca
gacagcttcggctggcttatcggttccgaaaaatgggttgctgaaaacccgggaaccgca
tcaggtctcgaagaaatcttcgatgaaatttcacccattgaaaatactgctcaaacaatg
gggctcgttctttcggcaccgcattttgaggaaccaaaatattccatacttgaatgccgt
gaacgagatattacctacgcagcaccgctgtatgttacagcggaattccaaaattatgaa
acaggggaaattaaatctcaaacaacctttattggagatttcccccttatgacagaccgc
ggtaccttcattgttaacggtaccgagcgtgttgttgtttctcagctcgtgcgttcaccg
ggagtgtacttcgaacgcaccgctgataaaacctccgataaggatatttacaacgcaaaa
atcattccttcccgcggtgcatggctggaatttgaaatcgataagcgcgatagcgtcggc
gtacgtgtggatcgtaagcgtaagcaatccgtcaccgtattccttaaggccctgggcatg
gaagaatccgaaattcgtgaagtattcgctgatttccctgttcttcttaaaaccttggaa
aaggacaccgtccacacccaagaagaagccttgcgcgatctgtaccgcaagttgcgtcca
ggcgaaccgccgacagcagatgcaggacgaacactcctcaacaacttctacttcaacacc
aagcgttacgataccgctaaagttggacgctacaagataaataagaagctcggacttgat
gcggaaaacgaatcacgccagcttaccctggtagatatcactgcaaccctgcgttatctg
ctcgccctccatcagggtatggatcgcgtcaacgaaatgggtgaatacgctgaacttgtg
tgcacagaaggtggcaccccggttcgcgtaacaaccgacgatattgataacttctccaac
cgtcgcgtgcgcgcagtcggtgaacttatccaaaaccaggtacgtacaggacttgctcgc
cttgatcgtatggttcgcgaacgcatgacaacccaggaagtcgaagcaattacgccttct
tcgttgatcaacattcgccccatcgtcgcgtccatcaaggaattcttcggaacctcccag
ctttcccagttcatggatcaaaacaatccgctggctgggctcacacacaagcgacgcctc
tccgcgctcggtccgggcggtttgagccgtgaccgtgcaggcatggaagtgcgagacgtt
cacccgtcccactatggtcgcatgtgcccgattgaaacccctgaaggtccaaacattggt
ttgattggatccttggcgtcctttgcgcgagttaatactttcggcttcctggagacaccc
taccgtcgcgtcgtcgatggacgtgttacagatgttattgactacctccaggcaggagac
gaagataactacaatattgctcaggccgaagctcccattgatgagaacggtaacttcctc
gaagaagaagctctcgtgcgtgttcccggtggcgaacccgcccttgtgcccgtcgaagaa
gttgactacatggatgtctctgcacgtcagatggtttccatcggtaccggtatgattccg
ttcctggagcacgacgacgccaaccgagcactcatgggtgccaacatgcagcgtcaggct
gttcccttgattcgcccagtttccccatatgtgggaaccggttgggaaatgcgttgcgcc
gtcgattccggcgacgttaccaccgcagcggctcccggtgtcgttacagaagtcgattcc
gacgcaattcacgtcgaacaggacgacggacgtcacgtcatctacaagatgagcaaattt
gaacgttccaaccccggtaatgccatcaaccagcgcgttctcgttgacgtaggggaccgc
atcgaagcaggatcactccttgccgacggcgcggcaacagaaggtggagaactggctctc
ggccagaacctcctcgtcgccttcatgtcctggaacggctacaactatgaagatgccatt
attctttccgaacgttgcgtgcgcgacgatcttctaacctccattcacattgaggaacat
gaagtcgatgcccgcgataccaagctcggaccggaagaaatcacgagagacatccccaat
gtttccgaagaaatgatttcccacctggacgaacacggcattatccgtatcggtgcagaa
gttcgtgccggcgatattctcgtcggaaaaattacccctaagggtgaaaccgaactgacc
tccgaagaacgcctccttcgcgccatttttggtgaaaaagcgaaggaagttcgcgatacg
tccatgcgtgttccgcacggtgaatccggtatcgtcattggaattcgccagttcaacaag
gaaaataacgacgaacttccctccgacgtgaacgaaaccgtccgcgtctatattgcccag
cgtcgcaagatcaccgtcggtgataagatggcgggtcgccacggtaataagggtgttatt
tcgcgtattcttcccatcgaagatatgccgttcctcgaagatggaaccccggttgatatt
attctcaaccccctcggtgttcctggccgaatgaatctcggacagatttatgaactccac
ttgggttggatcgccaagcacggttgggatgcttcggcagcccgcgaagcaggcgaaaaa
tgggcgatgagtctgccagaaaatgctgtcaagggtaagcccggtcagcgtgtggcaact
cccgtattcgacggtttgacatccgatgaacttgaaggactcattaagagtgtcttgcct
aacgaggacggagaccacgttctcaacgaattcggtaaggcacgtctcttcgacggacgt
agcggtgagccattcccggagcctatctccgtgggttacatgtacatgttgaaactccac
catctcgtcgacgataagattcacgcacgttccaccggtccgtactccatggttacccag
caacctctgggtggtaaggcacagttcggtggccagcgcttcggagaaatggaagtgtgg
gcactggaagcatacggtgccgcgcataccctccaggaaatgttgaccgtgaagtccgac
gatactgttgggcgcgtgaaagtatatgaagcgatcgtgaagggcgataacatccccgaa
cccggaattccggaatccttcaaggttctcatgcaggaaatgcgttccctgtgcttgaac
ctggaagctctggatgcgggaggtgcagttattgaattgcaggaaactgaagaagaacgt
ttccgcggaaacaccaataaagaagtgcctgcaatgcccacgggtctcgaagatctttct
accggagcagatttctaa
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