Aurantimicrobium sp. MWH-Uga1: AURUGA1_00156
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Entry
AURUGA1_00156 CDS
T05539
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
auw
Aurantimicrobium sp. MWH-Uga1
Pathway
auw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
auw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AURUGA1_00156 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
auw03021
]
AURUGA1_00156 (rpoB)
03400 DNA repair and recombination proteins [BR:
auw03400
]
AURUGA1_00156 (rpoB)
Enzymes [BR:
auw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AURUGA1_00156 (rpoB)
Transcription machinery [BR:
auw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AURUGA1_00156 (rpoB)
DNA repair and recombination proteins [BR:
auw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AURUGA1_00156 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AXE53868
LinkDB
All DBs
Position
147270..150875
Genome browser
AA seq
1201 aa
AA seq
DB search
MENSTSGPTLAGLIGFAIYPTPTTTMMVHDGPTEVISLAAARNAKDTKSIKNGRSASRLS
FAKITDTLTVPDLLALQTESFDWLVGNEHWQKRVEEAKKEGRQDLPSRTGLEEIFEEISP
IENLDETMQLSFTNPYLEPEKYSIFECKERGKTYAAPLYVEAEFMNHVTGEIKTQTVFMG
DFPLMTEKGTFIINGTERVVVSQLVRSPGVYFERAQEKTSDKDVYSARIIPSRGAWLEFE
IDKRDAVGVRIDRKRKQSVTVFLKALGLTSEEIATEFAGYDSILQTLEKDTILTKEDALR
DIYRKLRPGEQVAAEAARALLDNFYFSPKRYDLAKVGRYKINRKLGLEAPLTDSVLRVED
IIATIKYLVALHNDEKTFPGVRDGKKVDIRLDVDDIDHFGNRRIRAVGELIQNQVRTGLS
RMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFGTSQLSQFMDQNNPLAGLTHKRR
LSALGPGGLSRERAGVEVRDVHSSHYGRMCPIETPEGPNIGLIGSLASFARINAFGFIET
PYRRVVKGKVTEHIDYLTASEEDDFVVAQANAPLTKDSHFAEERVLVRRKGGEVELVPAA
EVDYMDVSPRQMVSVGTSLIPFLEHDDANRALMGANMQRQAVPLLRSESPLVGTGMENFA
AIDAGDVILANAAGVVSEVSADVVTVQLDAGGTEDYFLRKFDRSNQGTSYNHRVIVTAGE
RVEVGQVIADGPATENGELALGKNLLVAFMPWEGHNFEDAIILSQRLVQDDVLSSIHIEE
YDVDARDTKLGKEEITRDLPNVSPELIANLDERGIIRIGAEVRPGDILVGKVTPKGETEL
SAEERLLRAIFNEKSREVRDTSLKVPHGEAGTIIGVKVFDAENDEDELGSGVNQRVVVYI
AQKRKITEGDKLAGRHGNKGVIAKILPVEDMPFLEDGTPVDVVLNPLGIPGRMNFGQVLE
THLGWIAKQGWKVEGNPEWAANLPAEAFEAAPGTKVATPVFDGALEEEIAGLLDVTTPTR
DGDRLIGASGKARLFDGRSGEPFPEPISVGYMYILKLHHLVDDKIHARSTGPYSMITQQP
LGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDIVGRVKVYEAIVKGENIQEPG
IPESFRVLMKEMQSLGLNVEVLNEAGDVVSLRDADDEAYRAAEELGINISTRFESSSIDE
I
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
gtggagaactccacgagtggccccactttagcgggtctcatcgggtttgcaatttatccc
acaccaaccacaaccatgatggtccatgacggacccacggaggttatttccttggctgct
gcgcgcaacgcaaaagacaccaagtccatcaagaacggccgtagtgcatcgcgcttgtcg
ttcgcgaagattacggacactctgactgttcccgatcttctggcacttcagaccgagagc
tttgactggctcgtcggaaatgaacactggcagaagcgtgtggaagaagcaaagaaggaa
ggtcgccaggacctgccttcacgcactggtctagaagagatctttgaagagatctctccc
atcgaaaacctcgatgagaccatgcagctctctttcaccaacccgtatctcgagcctgag
aagtactccatcttcgagtgcaaggagcgtggcaagacctacgctgctcctctgtatgtc
gaagcagagttcatgaaccatgtcacgggtgaaattaagacccagaccgtgttcatgggt
gacttccctctcatgaccgaaaagggaaccttcatcatcaacggcaccgagcgtgtagtt
gtgtctcagctggttcgttcccccggtgtgtacttcgagcgtgcacaggaaaagacctct
gacaaggacgtttactccgcacgcatcatcccaagccgtggcgcatggctcgaattcgaa
atcgacaagcgtgacgctgttggtgttcgtatcgaccgtaagcgtaagcagtctgtcact
gtcttcctcaaggccctcggtctgaccagcgaagaaatcgcaactgagtttgccggttat
gactccatactgcagaccctggaaaaggacaccatcctcaccaaggaagacgctctgcgc
gacatttaccgcaagctccgtccaggcgagcaggttgctgctgaagctgcacgtgcgctt
ctggacaacttctacttcagccccaagcgctacgacctcgccaaggtaggtcgttacaag
atcaaccgcaagctcggtcttgaagctccgctgactgactctgttcttcgcgttgaagac
atcattgcaactatcaagtacctcgttgcactgcacaacgacgagaagaccttccccggt
gttcgcgatggcaagaaggttgacattcgtctcgacgtagacgacatcgaccacttcggt
aaccgtcgtatccgcgccgtcggtgagctcatccagaaccaggttcgtaccggtctgtcc
cgtatggagcgcgtcgttcgcgagcgcatgaccactcaggacattgaggcgattactcct
cagaccctgatcaacgtgcgtcccgttgtcgcagcaatcaaggagttcttcggaacctca
cagctgtcacagttcatggaccagaacaacccgcttgctggtttgacccacaagcgtcgt
ctgtccgctctgggccccggtggtctctcacgtgagcgtgcaggtgttgaggttcgtgac
gttcactcgtctcactacggacgtatgtgtcctattgaaacccctgaaggccccaacatt
ggtctgattggttcgctcgcatccttcgcgcgtatcaacgctttcggtttcattgagacc
ccctaccgccgcgtggtcaagggcaaggtaaccgagcacatcgattacctcaccgcttcg
gaagaagatgacttcgttgtggcacaggcaaacgctccactgaccaaggacagccacttc
gctgaagagcgtgttctggttcgtcgtaagggtggcgaggttgaactcgttcctgcggct
gaagtggactacatggatgtgtccccacgtcagatggtgtctgttggtacctcgctgatt
ccattcctcgagcacgacgatgcaaaccgcgcactcatgggtgccaacatgcagcgtcag
gctgtgccactgctgcgtagcgaaagcccgctggttggtaccggtatggaaaacttcgcc
gcaatcgatgctggtgacgtgatcctcgcaaacgctgctggtgtcgtttctgaggtgtcg
gctgatgtcgtcactgttcagctcgatgctggtggaaccgaggactacttcctgcgtaag
tttgaccgctcgaaccagggcaccagctacaaccaccgtgtcatcgtgaccgctggtgag
cgtgttgaggttggtcaggtcatcgctgatggtcctgccaccgaaaacggtgaactggct
ctgggtaagaacctgctcgtggcattcatgccctgggaaggtcacaacttcgaggatgcg
atcatcctctcccagcgtctggttcaggacgacgtcctttcctcaattcacatcgaggaa
tacgacgttgatgctcgtgacaccaagctgggtaaggaagagatcactcgcgacctgccc
aatgtgtcccctgaactcatcgctaacctcgacgagcgcggcatcatccgtatcggtgca
gaggttcgccccggcgacatcctcgtcggtaaggtcacacctaagggtgagactgagctt
tctgctgaagagcgcctgctgcgcgccatcttcaatgaaaagagccgcgaagttcgcgac
acttctctgaaggtgcctcacggtgaagccggaaccatcattggtgtgaaggtattcgac
gcagagaacgacgaagacgagctcggctcgggcgtcaaccagcgcgttgttgtctacatc
gctcagaaacgtaagatcaccgaaggtgacaagcttgctggtcgtcacggaaacaagggt
gttatcgccaagattctccctgttgaagacatgccattcctcgaagacggaactcctgtc
gacgtcgtgctcaacccactgggtatccccggtcgaatgaacttcggtcaggttttggaa
acccacctcgggtggattgcgaagcagggttggaaggttgaaggcaacccagaatgggct
gcaaaccttcctgcagaagcattcgaggctgcccctggcaccaaggttgctacccccgtg
ttcgacggtgctctcgaggaggaaatcgctggtctactcgatgtgaccacacctactcgt
gacggtgaccgcctgattggtgcttccggtaaggcacgtctgttcgacggtcgttctggt
gagccattccctgagcccatctctgtgggttacatgtacatcctgaagctgcaccacctt
gtcgatgacaagattcacgcacgttcaacgggtccttactcgatgatcacgcagcagcct
ctgggtggtaaggcacagttcggtggacagcgcttcggtgagatggaggtgtgggcactg
gaagcttatggtgccgcttacgcacttcaggaacttctcaccatcaagtccgacgacatc
gtgggccgcgtcaaggtctacgaagccatcgtcaagggtgagaacatccaggaacccggt
atccccgaatcgttccgtgttctcatgaaggaaatgcagtccctcggtctcaacgttgag
gttctcaacgaagctggcgatgtcgtcagcctccgcgacgccgacgatgaggcataccgt
gccgctgaagagctcggtatcaacatctctacccgtttcgagtcttcgtccatcgacgag
atctaa
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