Azotobacter vinelandii CA6: AvCA6_06170
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Entry
AvCA6_06170 CDS
T02634
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
avd
Azotobacter vinelandii CA6
Pathway
avd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
avd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AvCA6_06170 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avd03021
]
AvCA6_06170 (rpoB)
03400 DNA repair and recombination proteins [BR:
avd03400
]
AvCA6_06170 (rpoB)
Enzymes [BR:
avd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AvCA6_06170 (rpoB)
Transcription machinery [BR:
avd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AvCA6_06170 (rpoB)
DNA repair and recombination proteins [BR:
avd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AvCA6_06170 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AGK18739
UniProt:
M9YE24
LinkDB
All DBs
Position
593880..597956
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGVSKDKLRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALGYSTEEVLDIFYDTNVFHVTEQG
LSLELVPQRLRGEIAVFDIKDASGKVIVEQGRRITARHINQLEKAGIKELDVPLEYVLGR
TSAKVIVHPSTGEIIAECNSELTQDLLVKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS
TTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGREEIE
GAGVLSREDIVDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGQVTDEIVFLSAIEEADHVIAQASATLDENGRLIDELVAVRHLNEFTVKAPEDVTLMDV
SPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVNNDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
QVARGDIMADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVMAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIERMQLDE
IRKDLNEEFRIVEGATFERLRAALVGAVCEGGAGLKKGTEIDDGILDGLERGQWFKLRMA
DDALNEQLEKAQAYLADRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPYDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKVAELRQFLGEVYNEIGGRQKEDLDSLSDSEILDLASNLRGGVPMAT
PVFDGARETEIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMH
ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM
YKNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttatctcctggctatccagttggattcctatcgcgaattcctgcag
gccggtgtgagcaaggacaagctccgcgacgttggcttgcatgcagccttcaagtccgtt
ttcccgatcatcagctattccggcaatgctgccctggaatacgttggctaccgtctgggc
gagccggccttcgacgtcaaggagtgcgtgctgcgtggtgtgaccttcgccgtaccgctt
cgcgtgaaggttcgcctgatcattttcgacaaggagtcctcgaacaaggcgatcaaggac
atcaaggagcaggaggtctacatgggggaaatccccctgatgaccgagaacggcaccttc
atcgtcaacggtaccgagcgcgtgatcgtttcccagctgcaccgctccccgggtgtgttc
ttcgaccacgaccgcggcaagacccacagctccggcaaactgctgtattccgcacggatc
attccctaccgtggctcctggctcgacttcgagttcgatccgaaggatgccgtgttcgtc
cgtatcgaccgccgccgcaaactgccggcttcggtgctactgcgggcactgggctactcc
accgaggaagtgctggacattttctatgacaccaacgtattccacgtgacggagcagggg
ctcagcctggaactggtgccccagcgcctgcgtggcgagatcgctgtcttcgacatcaag
gatgcctccggcaaggtcatcgtcgaacagggacggcgcatcaccgcccgtcatatcaac
caactggaaaaggccggcatcaaggagctggacgttccgctggaatacgtcctcgggcgg
acttcggccaaggtcatcgtgcacccctccaccggcgaaatcatcgccgagtgcaacagc
gaactgacccaggacctgttggtgaagatcgccaaggctcaggtggtgcgcatcgaaacc
ctctacaccaacgacatcgactgcggtccgttcatttccgacacgctgaagatcgactcg
accaccaatcaactggaagccttggtcgagatctatcgcatgatgcgtccgggcgagccg
ccgaccaaggatgccgccgagaccctgttcaacaacctgttcttcagtgccgagcgttac
gacctgtctgctgtcggccgcatgaagttcaaccgccgtatcggtcgcgaggagatcgag
ggggctggggtgctgagccgcgaggatatcgtcgacgtgctcaagaccctggtggacatc
cgcaacggcaagggtatcgtcgatgacatcgaccacctgggtaaccgtcgtgtgcgctgc
gtcggcgaaatggccgagaaccagttccgcgtcggcctggtccgcgtcgagcgcgctgtc
aaggagcgcctgtcgatggcggagagcgagggcctgatgccccaggacctgatcaatgcc
aagccggtggctgccgcggtcaaggagtttttcggctccagccagctgtcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgtcgtgtttccgcgctcggtccg
ggtggtctgactcgcgaacgcgcgggcttcgaggtgcgcgacgtacacccgacccactac
ggccgcgtgtgtccgatcgaaacccctgaaggtccgaacatcggcctgatcaactcgctg
gccgcctatgcccgtaccaaccagtacggcttcctggaaagcccgtaccgggtggtcaag
gaagggcaggtgaccgacgagatcgtgttcctttccgccatcgaggaagccgatcacgtg
atcgcccaggcttcggcgacgctggacgagaacgggcggctgatcgacgaactggtggct
gtccggcacctgaacgaattcaccgtcaaggcacccgaagacgtcaccttgatggatgtg
tcgccgcgccaggtggtatccgtcgccgcctcgctgattcccttcctcgaacacgacgac
gccaaccgcgcgctcatgggttccaacatgcagcgtcaggccgtgccgaccctgcgcgcc
gacaagccgctggtcggtaccggcatggagcgcaacgtggcgcgcgactcgggcgtctgc
gtggtggctcggcgtggcggggtgatcgattcggtcgatgccagccgcatcgtggtgcgg
gtcaacaacgacgaggtcgagaccggcgaagccggcgtggacatctacaacctgaccaag
tacacccgttccaaccagaacacttgcatcaaccagcgtccgctggtcagcaagggcgat
caggtggcgcgcggcgacatcatggccgacggcccgtccaccgacatgggcgaactggcc
ctcgggcagaacatgcgcgtggccttcatgccttggaacggcttcaacttcgaggactcc
atctgcctgtccgagcgggtggtgcaggaagaccgcttcaccaccatccatatccaggaa
ctgacctgcgtggcccgcgacaccaagctcggcccggaggaaatcaccgcggatatcccg
aacgtcggcgaggccgcgctgaacaagctggacgaggcgggtatcgtctatgtcggtgcc
gaggtcatggcgggcgacatcctggtcggcaaggtcacgccgaagggcgagactcagctg
accccggaagagaagctgctgcgtgcgatcttcggcgagaaggccagcgacgtgaaggac
acctccctgcgcgtacccaccggtaccaagggcaccgtcatcgacgtccaggtgttcacc
cgcgatggcgtcgagcgcgattcgcgtgccttggccatcgagaggatgcaactggacgaa
atccgcaaggacctcaacgaggagttccgtatcgtcgagggggcgaccttcgagcgtctg
cgggccgctctggtcggtgccgtatgcgagggcggggcgggcctgaagaagggcaccgag
atcgacgacggaatcctcgacggactcgagcgtggccagtggttcaagctgcgcatggcc
gacgacgcgctcaacgagcagttggaaaaggcccaggcctatctggccgaccgccggcaa
ctgctcgacgacaagttcgaggacaagaagcgcaagctgcagcagggcgacgacctggca
ccgggcgtgctgaagatcgtcaaggtctatctggccatcaagcgccgtatccagcctggc
gacaaaatggccggccgccacggcaacaagggtgtggtatcggtgatcatgccggtcgag
gacatgccctacgatgccaacggcacccccgtggacatcgttctcaacccgctgggcgtg
ccgtcgcggatgaacgtcggacagatcctcgagacccacctggggctggccgccaagggg
ctgggtgagaagatcaaccggatgctcgaggagcagcgcaaggttgccgaactgcgccag
ttcctcggcgaggtgtacaacgagatcggcgggcgccagaaggaggatctggactctctg
agcgattccgagattctcgacctggcgagcaacctgcgcggcggcgtgccgatggccacg
ccggtgttcgacggtgccagggaaaccgaaatcaaggccatgctgaaactggccgacctg
ccggaaagcggtcagatgcgcctgttcgacggccggaccggcaaccagttcgagcgcccg
accaccgtcggctacatgtacatgctcaagctgaaccacctggtcgacgacaagatgcac
gcgcgttccaccggttcctacagcctggttacccagcagccgctgggcggcaaggcgcag
ttcggcggtcagcgtttcggggagatggaggtctgggcgctggaagcctacggtgccgcc
tacaccctgcaggaaatgctcaccgtgaaatcggacgacgtgaacgggcggaccaagatg
tacaagaacatcgtggatggcgatcaccggatggaggccggcatgcccgagtccttcaac
gtgctgatcaaggaaatccgctcgctcggcatcgacatcgaactggaaaccgaataa
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