KEGG   Agrobacterium vitis VAR03-1: RvVAR031_pl03080
Entry
RvVAR031_pl03080  CDS       T08810                                 
Symbol
nrdE
Name
(GenBank) ribonucleoside-diphosphate reductase
  KO
K00525  ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Organism
avf  Agrobacterium vitis VAR03-1
Pathway
avf00230  Purine metabolism
avf00240  Pyrimidine metabolism
avf01100  Metabolic pathways
avf01232  Nucleotide metabolism
Module
avf_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
avf_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Brite
KEGG Orthology (KO) [BR:avf00001]
 09100 Metabolism
  09104 Nucleotide metabolism
   00230 Purine metabolism
    RvVAR031_pl03080 (nrdE)
   00240 Pyrimidine metabolism
    RvVAR031_pl03080 (nrdE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:avf03400]
    RvVAR031_pl03080 (nrdE)
Enzymes [BR:avf01000]
 1. Oxidoreductases
  1.17  Acting on CH or CH2 groups
   1.17.4  With a disulfide as acceptor
    1.17.4.1  ribonucleoside-diphosphate reductase
     RvVAR031_pl03080 (nrdE)
DNA repair and recombination proteins [BR:avf03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   Modulation of nucleotide pools
    RvVAR031_pl03080 (nrdE)
SSDB
Motif
Pfam: Ribonuc_red_lgC RNR_N Ribonuc_red_lgN PBS_linker_poly
Other DBs
NCBI-ProteinID: BCH56977
LinkDB
Position
pRvVAR031a:complement(345685..347811)
AA seq 708 aa
MKADEQALDYHALNAMLNLYDEDGKIQLDKDALAAKQYFLQHVNQNTVFFHNLREKLDYL
VDQGYYEQAVLDQYAFNFVRDLFDHAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERY
EDRICMVALTLAQGNEALARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRMEDN
MESIARGINSALQLSKRGGGVALSLTNIREAGAPIKQIENQSSGVIPVMKLLEDSFSYAN
QLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELAKNNEDM
YLFSPYDVERVYDVAFSEISVTEKYREMVADSRIRKKKIKARDFFQVLAKIQFESGYPYI
MFEDTVNRANPIAGRISMSNLCSEILQVSDVSTYNDDLSYKTMGKDISCNLGSLNIAAVM
DSSDFGKTIETAIRALTAVSDMSHISSVPSIERGNNDSHAIGLGQMNLHGYLAREHIFYG
SEEGIDFTNIYFYTVTYHAIRASNRIAVERDTSFKGFENSKYASGEYFDKYTQTEWLPAT
GRVADLFQTAGIAIPTQDDWLALKEAVMTSGLYNQNLQAVPPTGSISYINHSTSSIHPIV
SKIEIRKEGKIGRVYYPAAFMSNDNLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLF
FRDTATTRDINRAQIYAWKKGIKTIYYIRLRQMALTGTQVQGCVSCAL
NT seq 2127 nt   +upstreamnt  +downstreamnt
ttgaaggcggacgaacaggcgctggattatcacgcgctgaacgcgatgctaaacctctac
gatgaggatggtaaaatccaacttgataaggacgctctggcggccaagcagtatttctta
cagcatgtcaaccagaatactgtcttcttccataatctgcgggagaagctcgattacctc
gtagaccaaggctactatgagcaggcggtgttggatcagtatgcgttcaacttcgtccgc
gatcttttcgatcatgcctatgcgaagaagtttcgcttcccgacctttctcggcgccttc
aaatattacaccagctacacgctgaagaccttcgacggaaagcgctatctggagcgctac
gaagaccggatctgcatggtggcgttgacgctggcgcagggcaatgaggctttggcacgt
gacatggtcgacgagattatctccggccgcttccagcccgcgacaccgacatttctcaat
gccggcaagaagcaacgcggcgaactcgtctcctgcttcctgctgcgcatggaagacaat
atggaaagcatcgcccgtggcatcaactcggcactgcaactttcaaagcgtgggggtggg
gtggcgttatccctgaccaatattcgcgaggcaggcgcaccgatcaagcaaatcgagaac
cagtcctcgggcgtcatcccggtgatgaagctgctggaggacagtttttcctatgccaat
cagctcggtgcgcgccagggggcaggggctgtctacctgaatgcccatcatcccgatatc
atgcgcttcctcgacaccaagcgggaaaacgccgatgagaagattaggatcaagacgctg
tcgctcggtgtggtggttccagacatcacctttgaattggcgaaaaacaatgaggatatg
tacctgttttcaccttacgacgtggagcgtgtctacgacgttgcgttttccgaaatctcg
gtcacggaaaaatatcgcgagatggtcgccgacagccgcattcgcaagaagaagatcaag
gcgcgtgatttcttccaggtgctcgccaaaatccagttcgagagcggctatccatacatc
atgttcgaggacacggtgaaccgcgccaacccgatagccggacgcatttcgatgagcaat
ctctgctcggaaatcctacaggtgagcgacgtcagcacttacaatgacgacctgtcctac
aagaccatgggtaaggacatctcctgcaatctcgggtccttgaacatcgcagccgtgatg
gattcctcagacttcggcaagaccatagagaccgcgatccgggctctgaccgccgtgtcc
gacatgagccatatctcgtcggttccctcgatcgagagaggcaataacgatagccacgcc
atcggccttggccagatgaacctgcacggctatctcgcacgcgagcacatcttctacgga
tcggaagagggcatcgatttcaccaacatttatttctacacggtaacctatcacgccatc
cgcgcctcgaaccggattgccgtcgaacgcgacacgagcttcaagggcttcgagaactcg
aaatatgcgtccggcgagtatttcgacaagtatacgcaaaccgaatggcttccagcgacc
ggacgcgtcgcagacctgtttcaaacggccggaatcgcgatcccgacacaggatgactgg
ttggcgctgaaagaggcggtgatgacgtccggcctttataaccagaaccttcaggccgtg
ccaccaacggggtcgatctcctacatcaaccattcgacctcctcgatccatccgattgtc
tcgaagatcgagatccgcaaggaaggcaagatcggccgcgtctactatccggccgccttc
atgagcaatgataaccttgattactatcaggacgcctatgagatcggacctgagaagatc
atagacacctatgcggccgccacccagcatgtggatcagggtctttcgctgacgctgttt
ttccgtgacaccgcaacgacccgcgacatcaatcgggcgcaaatctacgcctggaagaag
ggcatcaagaccatctattacattcgccttcgccagatggcgctgaccggcacgcaagtg
cagggctgcgtatcctgcgcgctgtga

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