Allorhizobium ampelinum: Avi_2280
Help
Entry
Avi_2280 CDS
T00851
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
avi
Allorhizobium ampelinum
Pathway
avi03410
Base excision repair
avi03430
Mismatch repair
avi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Avi_2280 (recJ)
03430 Mismatch repair
Avi_2280 (recJ)
03440 Homologous recombination
Avi_2280 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avi03400
]
Avi_2280 (recJ)
DNA repair and recombination proteins [BR:
avi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Avi_2280 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Avi_2280 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Avi_2280 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ACM36632
UniProt:
B9JWK4
LinkDB
All DBs
Position
1:1872961..1874763
Genome browser
AA seq
600 aa
AA seq
DB search
MLEPADPIERAFLNVETSVSGQRWVSRLDQAGLNRSLAIAQVHGIPDLVARVLAGRGVAV
ADAQAFLDPTIRDLMPDPSSLTDGDKAADRLVAAIMRSERVAIFGDYDVDGAASSALLWR
FLAHFGIEAEIYIPDRIFEGYGPNAVAIGQLIERGAQLIVTVDCGSTSHEALEEARRRGV
DVVVIDHHQMGQDLPACLALVNPNRSDDLSGQGHLCAAGVVFMVLVGTLRKLREAGHGAA
RSLDLLAWLDLVALATVCDVVPLKGLNRAYVVKGLIAARHQQNAGLAALLKIAGIGGPVT
PYHFGFLVGPRINAGGRIGDAALGSRLLTLDDAAEADEIAAQLDDLNRQRQAMEAQMLAE
AEAEAMAEYGTGENAAVILTAREGWHPGIVGLLAARLKERFQRPAFAIAFDGSGKGTGSG
RSIAGFDMGKMVRAAVDNGLLVKGGGHAMAAGLTVERGNLGKLRAFFDEQAQEKVMALSA
IRALKIDGAVGASGATLALIDLLETAGPYGSGHSQPIFAIPAHRIRDSRLIGTSHVKVTL
EAPDGSRIDGIAFRAKETPLGDLLLGRRGDAVHVAGCLGAELWQGTRRIQIRILDAAPAF
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaacccgccgacccgatcgaacgcgcctttttgaatgtcgagacctcggtcagc
ggtcagcgctgggtgtctcggctggatcaggctgggttgaaccgatcactggcgattgcg
caggtgcatggcattcccgatctggtggcgcgtgttctggccgggcggggcgtggcggtt
gccgatgcgcaagcctttctcgatccgaccatccgcgacctgatgcccgacccttccagc
ctgaccgatggtgacaaggccgcggaccggctggtggcggcaatcatgcgctctgagcgc
gtggcgatttttggcgattatgatgtcgatggggctgcgtcgtcggcgctgttgtggcgg
tttctcgcgcatttcggtattgaggccgaaatctatattcccgaccgaattttcgaaggt
tatggcccgaatgccgttgccatcggccaattgatcgagcgcggcgcgcaattgatcgtc
acggtggattgcggctcgaccagccatgaggcccttgaggaggccagacgcagaggcgtt
gatgtggtggtgatcgaccatcaccagatgggccaggatttgcccgcctgtctggcattg
gtcaatcccaacaggagcgacgatctgtcaggacagggccatctctgcgcagcgggcgtg
gtgttcatggtgctggtgggaacgctgcgcaagctgcgtgaggctggtcacggtgctgca
cgctcgctcgatctgctggcctggcttgatctggtggcgctggcgacggtctgcgatgtc
gtgccgttgaaagggttgaaccgcgcctatgtggtgaaaggcttgattgccgcccgtcac
cagcagaatgccggtcttgcagcccttctgaagatcgccgggattggcggtccggtgacg
ccctatcatttcggttttctggttgggccacgaatcaatgccggtggccggatcggcgat
gcggcgctgggcagccggttgctgacgctggacgacgctgccgaggccgatgaaatcgcc
gcccaactggatgatctgaaccgccaacgtcaggcgatggaagcgcagatgctggccgag
gccgaagccgaggccatggcggaatatggcaccggcgagaatgccgctgtgattctcaca
gcccgggaaggctggcatcccggcattgtcgggctgctggcggcccgtcttaaagagcgg
ttccaacggcctgcctttgccattgccttcgatggatcaggcaaggggacaggctccggc
cggtccattgccggtttcgacatgggaaagatggtgcgtgcggcggtggacaatggcctg
ctggtcaagggcggcggccacgcgatggccgcagggctgacggtagagcgtggcaatctc
ggcaagttgcgggcgttttttgatgaacaggcgcaggaaaaggtcatggcgctttccgcc
atcagggccttgaagatcgatggtgcggttggcgcatccggtgcgacgcttgcgttgatc
gacctcctggaaaccgccggaccctatggttccggccattctcagccgatcttcgccatc
ccggcccaccgcattcgcgattctcggctgattggcaccagccacgttaaggtcacgctg
gaagcgccagatggcagccgaatcgacggcattgcctttcgcgccaaggaaacaccgctc
ggcgatcttctgctcggacgccgaggcgacgccgtgcatgtcgccggctgccttggggca
gaactctggcaaggcacgcgtcgtatccagatccgtattctggatgcagcgccagcgttt
tga
DBGET
integrated database retrieval system
