Apaloderma vittatum (bar-tailed trogon): 104280361
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Entry
104280361 CDS
T08559
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104280361 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avit03019
]
104280361 (CNOT1)
Messenger RNA biogenesis [BR:
avit03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104280361 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104280361 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
104280361
NCBI-ProteinID:
XP_009876286
LinkDB
All DBs
Position
Unknown
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SISQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcacattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgcctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagacccaatttttgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcgtacgccattgacaatccgttgcac
tatcagaagagtctaaagccttcaccccatttgtttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgattttcggtctcgctttactgaactctttcagctcggat
ctacgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcggtcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatatcgcgatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggtaggacag
gaacagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggcatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtacaagtgtcgaagaatgtcgcaacataatcatgcagttc
ggcgttcgggaagtgacggctgcccaggttgccagggttttggggatgatggctcggact
cattcgggattgacggatggtattccattacaatctatttcggctcccggcagtggaatt
tggagtgacgggaaagataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttaattgatgttcttaaagagctgaatcctagcctggacttcaaagtcgtaacctatgag
ttggaccatccgggatttcagattcgtgacagcaagggcctgcatattgtggtgttcggc
atccagagagggctgggcatggaagtttttccagttaatgccatatacagaccttggaag
cacgcagagggccagctctccttcattcaacattccctcataaaccctgacatcttttgt
tttgctgactacccgtgccatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaatcgctacctggaagagcctggatttgatcgaatctctgttacggttg
gccgaagtgggacagtacgagcaggttaagcagctcttcagttttcccatcaagcattgc
ccagatatgttggtattggccttattgcagatcaacacgtcctggcacaccttgcgccat
gagctcatctccacgctcatgcccattttcctcggcaaccaccccaactcggccatcatt
ttgcactacgcgtggcacggacagggtcagtctccttcgatacgtcagctgatcatgcat
gcgatggccgagtggtacatgagaggggagcaatacgaccaggccaaactgtcacgtatc
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcctgtatgactttctta
aagagaagatgtccgtctatcctgggtggcctcgctcccgaaaaagatcagcccaaaagt
gctcaacttcctccagaaaccttggcgacgatgttggcgtgcctgcaagcttgtgctggg
agcatttctcaggagctgtcggagacgatcctcaccatggtagccaactgcagtaacgtc
atgaacaaggccaggcagccaccgcccggagtcatgcccaaaggacgcccgcccagcgct
agcagcttggatgccatctctcctgtccagatcgactcgctggcaggaatggcatctctt
agcttaggtggctcagctgctcctcatacccagagcatgcaaggcttccctccaaatttg
ggctctgccttcagtactcctcagtcaccagcaaaagcgttccctccgctttccacccaa
aaccagacgaccggtttcagtggcatcggaggactctcgtcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagccctgggccttcctgcggtgaac
aacgacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccgcca
catccgaccatgtctgtggatgaggtcttggaaatgctgcagaggtttaaggattccaac
attaaacgggagcgagaagtgtttaactgtatgctgcgcaacttgtttgaggaataccgg
ttcttcccccagtacccggataaagagctgcacataacagcctgcctcttcgggggcatc
atcgagaaaggactggttacttatatggccttgggcctggccctgcgctacgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcatttacaggagtacatagaatacggacagcaatccagagac
cctcctgtgaagatgcagggttcgatcaccacccctggaagcattgcacttgcccaggct
caggcccaggcccaagttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccattacgatcacccgaccaactggagtc
agcttcaagaaagacgtgccgccttccattaatactaccaacattgatacgctgttagta
gcaacagatcaaactgagagaattgtggaacctccggagaacgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggttgaagaattgaaggaa
acggtgaaagaggagttcatgccttgggtatcacagtatcttgtgatgaagagagtcagt
attgagcctaattttcacagcttgtactcaaacttccttgacacacttaagaacccagaa
tttaataaaatggttctgaatgaaacctacagaaatatcaaggtgctactgacgtcagac
aaagctgcagccaacttttcagaccgttccttgttaaagaaccttggtcactggctggga
atgattactctggctaaaaataagcccatcttgcacacggatttggatgtgaaatcgctg
ctgctggaagcatacgttaagggacagcaggagttgctttacgtagtgccattcgttgcc
aaagtcttagagtccagtgtcaggagcgtggtcttcaggcccccaaacccatggacaatg
gccattatgaatgtcttggctgagctacatcaagaacatgatctaaaattgaatctgaag
tttgagattgaggtgctctgcaagaatcttgcactggacatcaatgaactgaaacctgga
agtctcctgaaagataaagatcgtctgaaaaatctggacgagcagctgtcggctccaaag
aaggatgtgaagcagccggaagagctgccacccatcacgacaacgactgcttctacaact
ccagctaccagcaccacttgtacagccacggttcctccacagccccagtacagttatcac
gacattaacgtctattctttaggagggttggctccacatattaccttaaatccaacgatc
ccgctgttccaagcccacccgcagctgaagcagtgcgtgcggcaggcgatcgagcgagcg
gtgcaagagctcgtccatcccgtggtggatcgctccattaagatcgccatgaccacttgc
gagcagatcgtgaggaaggacttcgccctggattcggaggagtcgcgcatgcgcgtggcc
gcacatcacatgatgcgcaacctgaccgccggcatggccatgatcacctgcagggaacct
ttgctgatgagcatagcgaccaacttgaaaaacagttttgctactgcgctaagggcagcc
tccccacaacagagggacatgatggagcaggcggctgcccagttagcgcaggataactgt
gagctggcctgctgctttatccagaagacagctgtggaaaaagcaggccctgagatggac
aagaggctcgcaactgaatttgagctccgaaaacatgccagacaagaggggcgtcggtac
tgcgatcccgttgtgttaacttaccaggctgagcggatgccggagcagatcaggttaaag
gttggaggtgtggacccgaaacagctggctgtttatgaagagtttgcacgcaatgttcct
ggcttcttgcctaccaatgacttaactcagcctacgggattcttggctcagcctatgaag
caagcttgggctacagatgatgtagcccagatctatgacaaatgcatgacagagctggag
cagcacctgcagtccattccacacaccctggccatgaatcctcaagctcaagcgttgcgc
agcctcttggaggctgtggtggtggctcgtaactcccgagacgctattgctgcgcttgga
ctcctgcagaaggctgtggagggcttgctggatgccaccagcggggcagatgctgacctc
ctgctccgctatcgcgagtgtcatctgctcgtgctgaaggctctgcaggacggccgggcg
tacggatctccatggtgtaataaacaaattactaggtgcctgattgaatgcagagatgag
tataagtacaacgtggaagctgtggagctgctaatccgcaatcacctcgttaacatgcag
cagtacgaccttcacttggctcagtcaatggagaacggcttgaactacatggccgtggcg
tttgccatgcagttggtcaagatcctgttggtggatgagagaagcgtcgcccacgtcacg
gaggcggatctgtttcacaccattgagactctcatgaggatcaacgctcattccagagga
aacgccccagaaggattaccgcagctgatggaagtggtccgctcgaactacgaagccatg
atcgaccgtgctcacggaggtcccaatttcatgatgcattcgggaatttcccaagcctcc
gagtacgacgacccgccggggctgagggagaaggcagaatacctgctgagggagtgggtg
aacctctaccactcggctgcagcgggccgcgacagtactaaagcgttctctgcgtttgtt
ggacagatgcaccagcaaggaatcctcaaaacggacgacctgatcacccgctttttccgg
ctttgcaccgagatgtgtgtggaaatcagctatcgtgctcaggccgagcagcagcataac
cctgctgccaaccccaccatgatccgagccaagtgctaccacaacttggatgccttcgtg
cgacttattgcgctgctggtgaagcactccggggaggccaccaacacagttacaaagatc
aacctcctgaataaggttctcggtatcgtggtgggagttcttctgcaagaccacgacgtt
cggcagagtgagtttcagcagcttccttaccatcgcattttcatcatgttgctgttggaa
ttaaacgctcctgagcacgtgctggagaccatcaacttccagacgctcacagctttctgt
aacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctggaa
ctgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaagggt
tggcctatgtatgcccagttactgattgatcttttcaagtacttggctcctttccttaga
aatgtggaactcaccaaacctatgcaaattctttacaagggcactctgcgtgtgttgctg
gtcttgttgcatgatttcccagaatttctttgtgactaccactatgggttctgtgatgtg
atcccacccaactgtattcagctaaggaatctgatcctgagtgccttcccacggaacatg
aggcttccagaccctttcacccccaatctaaaggtggatatgttaagtgagattaatatt
gctccacgaatactgacgaatttcactggagtgatgccacctcagttcaagaaagacttg
gattcctatctcaaaacccgttctccagtcacttttttgtcggatttgcgcagcaacctt
caagtatcgaatgaacccggcaaccgctacaacatccagctgatcaacgcactggtgctc
tacgtaggtacccaagctattgcgcacatccacaacaaaggtagcacgccctccatgagc
accatcacccactcggctcacatggacatcttccagaatttggcggtagacctggacact
gaaggccggtaccttttcttgaacgcaattgccaaccagctgcgataccccaacagtcac
acccactacttcagctgcaccatgctctacctgttcgcagaggccaacaccgaggccatc
caggagcagatcacgagggttctcttggaacgactgattgtaaatagacctcacccctgg
gggctccttattactttcatcgagctgatcaaaaatccagcctttaagttctggaaccac
gagttcgttcactgcgctccagaaattgaaaagttgttccagtcggttgcacagtgctgc
atggggcagaagcaggcccagcaagtcatggaagggactggtgccagttag
DBGET
integrated database retrieval system
