Aeromonas veronii B565: B565_3727
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Entry
B565_3727 CDS
T01462
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
avr
Aeromonas veronii B565
Pathway
avr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
avr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B565_3727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avr03021
]
B565_3727
03400 DNA repair and recombination proteins [BR:
avr03400
]
B565_3727
Enzymes [BR:
avr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B565_3727
Transcription machinery [BR:
avr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B565_3727
DNA repair and recombination proteins [BR:
avr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B565_3727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Fibritin_C
Motif
Other DBs
NCBI-ProteinID:
AEB51762
LinkDB
All DBs
Position
complement(4195364..4199392)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRDQVLDTPYLLSIQLDSFKQFIEADPEGEYGLEAAFRSVFPIT
SYSGSAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDAKDNLFVRIDRRRKLPASIILRALDFTSEQILATFFETIGFEVKDGKLMMD
LVPERLRGETATFDIVANGAVVVETGRRVTARHIRQLEKDAVTQIEVPVEYVVGKVAAKD
YAHPQTGEMVVTANQALSLEAIANLSQAGFKHFEVLFTNELDHGAYMSETLRVDSSSNRL
EALVEIYRMMRPGEPPTREAAEQLFENLFFSAERYDLSTVGRMKFNRRLGREDETGAGVL
TKDDIVDVMKRLIDIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYSRTNEYGFLETPYRKVIDGVIT
DEVDYLSAIEEGKYVIAQANAATTEDGRLKDELIPCRHKGESTFMNADQIQYMDVSPQQI
VSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERAVAVDSGVTVVAKR
GGVIDYVDASRIVLKVNEDELMPGEAGIDIYNLTKYTRSNQNTCINQRPCVMLGEPVMAG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVNERVVQEDRLTTIHIQELACIS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVYGTVVDVQVFTRDGVEKDKRAKEIEEMQLKEAKKDL
TEEFKILEDGIFGRSRNLLLAAGYSEDRLNKLDRSKWFELAIEDEGKQTELEQIAEQHVE
LKAEFDKKFENKRRKIIQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIC
PVEDMPHDEFGRPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGEKIDRMVKEQRELHE
MRNFLQQVYDLGEKDTQQVNIAELSDDDVRTLVGNLRKGLPVATPVFDGAKEREIKALLK
LADLPESGQIDLFDGRTGNRFERKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgaaaaaaaacgcattcgtaaggacttcggtaagcgagaccag
gtactggacacgccttatctgttgtccattcagctggactccttcaagcagttcatcgag
gctgacccggaaggtgaatatggcctagaggccgctttccgtagcgttttcccgatcacc
agttactccggtagtgctgagcttcagtatgtcagctatcgcctgggtgagccggtattt
gacgtaaaagaatgccagatccgtggagtgacctactccgcgccgctgcgtgtcaagctt
cgtatggttctgtacgaccgtgaagcagctgccggcaccgtcaaagacatcaaggaacaa
gaagtatacatgggcgaaattccgctcatgaccgagaacggcacctttgttatcaatggt
accgagcgggttatcgtctcccagctgcaccgcagcccgggcgtcttcttcgaccacgat
aaaggcaaaactcattcatccggtaaggtactgtataacgctcgcgttatcccctaccgt
ggctcctggctggacttcgagtttgatgcgaaagacaacctgtttgtccgtatcgaccgt
cgtcgcaaactgccagcatccattattctgcgcgccctggacttcacttccgaacaaatc
ctggccaccttcttcgagaccatcggttttgaagttaaagatggcaagttgatgatggat
ctggtgccggagcgtctgcgtggtgaaactgcgacctttgacatcgtggccaatggcgcc
gtggtggttgagaccggtcgtcgtgtgactgcgcgtcacatccgtcagttggaaaaagat
gccgttacccagattgaggtaccggttgagtatgttgttggcaaagttgctgccaaggac
tacgcacatccgcaaactggcgagatggtcgtgaccgccaaccaggcgctgagcctggaa
gcgatcgccaacctgtcccaggccggcttcaagcatttcgaggttctgttcaccaacgaa
ctggatcacggtgcttacatgtccgagaccctgcgtgtcgactccagctccaaccgtttg
gaagcgctggtcgagatttatcgcatgatgcgtccgggcgagccgcctactcgcgaagct
gcagaacagctgttcgaaaacctgttcttctccgccgagcgttacgacctgtctaccgta
ggtcggatgaagttcaaccgccgtctgggtcgtgaagacgagactggcgctggtgtactg
accaaagacgacatcgtcgatgtgatgaagcgcctgatcgacatccgtaacggtaacgac
gaagtggatgatattgaccacttgggtaaccgtcgtatccgttctgtcggtgaaatggct
gaaaaccagttccgcgtcggtctggtgcgtgtcgagcgtgcggtcaaggagcgtctctcc
ctgggcgacctggacaccctgatgccgcaggatctgatcaacgccaagccgatctccgcc
gcagtcaaagagttctttggttccagccagctgtcccagtttatggaccagaacaacccg
ctctccgaagtgacccacaagcgtcgtatctccgcgctgggcccgggcggtttgactcgt
gagcgtgccggctttgaagtccgagacgtacacccgactcactacggtcgtctgtgccct
atcgagactcctgaaggtccgaacatcggtctgatcaactctctgtccgtgtactctcgt
accaacgagtacggtttcctcgagaccccgtaccgcaaggtcattgacggtgtgatcacc
gacgaagtggactacctgtctgctattgaagaaggcaagtacgtgatcgcacaggctaac
gccgcgaccaccgaagatggccgtctgaaagatgaattgatcccgtgccgtcacaaaggt
gaatccacctttatgaacgccgaccagatccagtatatggacgtgagcccgcagcagatc
gtatctgtggcagctgctctgatcccgttcctggaacacgatgacgcgaaccgcgcattg
atgggttcaaacatgcaacgtcaggctgtaccgactctgcgtgctgacaagccgctggta
ggtaccggtatggaacgcgctgtggccgttgactccggtgtaaccgtagtggccaagcgt
ggcggcgtaatcgactatgtcgatgcttcccgtatcgtcctgaaggtcaatgaagatgag
ctgatgccaggcgaagccggtatcgacatctacaacctgaccaaatacacccgttccaac
cagaacacctgtatcaaccagcgtccttgcgtgatgttgggtgagccggtcatggctggc
gacgtactggctgacggcccgtccaccgatctgggtgaactggcactgggtcagaacatg
cgcgtcgcgttcatgccgtggaacggttacaacttcgaagactcgatcctggtgaacgag
cgtgttgttcaggaagatcgcctgaccaccatccatatccaggaactggcctgtatctcc
cgtgacaccaaactgggtccggaagagatcactgctgacatcccgaacgtgggtgaagcc
gctctgtccaagctggacgagtccggtatcgtctacgtgggtgccgaagtgaagggcggc
gacattctggtcggtaaggtaacaccgaaaggtgaaactcagctgacgccggaagagaag
ctgctgcgcgccatcttcggtgagaaggcgtccgacgtgaaggactcctccctgcgtgta
ccgaacggtgtgtacggtaccgtggttgacgtgcaagtctttacccgcgatggcgtggaa
aaagacaagcgcgccaaagaaatcgaagagatgcagctgaaggaagcgaagaaggacttg
accgaagagttcaagatcctggaagacggcattttcggccgctcccgcaacctgctgctg
gccgccggttacagtgaagatcgtctgaacaagctcgatcgctccaagtggtttgaactg
gccatcgaagacgaaggcaagcagaccgaactggaacagatcgctgaacagcacgttgag
ctgaaagccgagttcgacaagaaattcgagaacaagcgtcgcaagattatccagggtgat
gatctggcgccgggcgtactgaaaatcgtcaaggtttatctggcagtcaagcgtcgcatc
cagccgggtgacaagatggcgggccgtcacggtaacaagggtgttatctccaagatctgt
ccggtcgaggatatgcctcatgacgagttcggccgtccggtcgacatcgtactgaacccg
ttgggcgtaccgtcccgtatgaacatcggtcagatcctcgaagtgcacctgggccttgcg
gccaagggtatcggcgagaagatcgatcgcatggtcaaagagcagcgcgagctgcacgag
atgcgcaacttcctgcaacaggtctacgacctgggcgagaaggacacccagcaagtgaac
atcgccgaactgtctgacgacgacgtacgtaccctggtgggtaacctgcgtaagggtctg
ccggttgcgactccagtgtttgatggtgccaaagagcgcgaaatcaaagccctgctgaag
ctggccgatctgccggaatccggtcagattgatctgttcgatggccgtaccggtaaccgc
ttcgagcgtaaagtaaccgttggttacatgtacatgctgaagctgaaccacttggtcgac
gacaagatgcacgcgcgttctaccggttcttacagcctggttacccagcagccgctgggt
ggtaaggctcagttcggtggtcagcgtttcggtgagatggaagtgtgggccctggaggct
tacggtgcggcatataccctgcaggaaatgctgaccgtcaagtctgacgatgtgaatggc
cgtaccaagatgtataagaacatcgtggatggcgaccaccgtatggagccgggcatgccc
gaatccttcaacgtattgctgaaggaaatccgctctctgggtatcaacatcgagctggac
gaagagtaa
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integrated database retrieval system
