Avibacterium volantium: NCTC3438_00455
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Entry
NCTC3438_00455 CDS
T06626
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
avt
Avibacterium volantium
Pathway
avt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
avt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC3438_00455 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avt03021
]
NCTC3438_00455 (rpoC)
03400 DNA repair and recombination proteins [BR:
avt03400
]
NCTC3438_00455 (rpoC)
Enzymes [BR:
avt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC3438_00455 (rpoC)
Transcription machinery [BR:
avt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC3438_00455 (rpoC)
DNA repair and recombination proteins [BR:
avt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC3438_00455 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
VEB22450
UniProt:
A0A3S5DJ68
LinkDB
All DBs
Position
1:458655..462917
Genome browser
AA seq
1420 aa
AA seq
DB search
MKDLVKFLKAQSKSSEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQAKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFESYIVTEPGMTDLEKGQLLTEEQYIDAEDRWGDEFEAK
MGAEAIQALLRDMDLEVECETLREELQETNSETKRKKITKRLKLLESFIQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGFATTIKAAKKMVEREDAIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNGKGEGMLLQDPREAEKAYRT
GQAELHSRVKVRITEYVKDASNEFVPQTSLVDTTIGRAILWMIAPKGMPFSLFNQTLGKK
AISKLINESYRRLGLKASVLFADQIMYTGFAYAARSGSSVGIDDMVIPAKKYEIISAAEQ
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSQEEVMNREGELEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTYEGIVMTPLIEGGDVKEPLRDRV
LGRVAAEDILKPGTDEVLIPRNTLLDEKLCDLIDENSVDSIKVRSVVTCDTNFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNNGTLR
LANVKFVTNKEGKLVLTSRNTELTIIDAFGRTKEHYKVPYGAVLNKADGDEVNAGEIVAN
WDPHTMPVVSEVSGFVKFVDITDGVTVTRQTDELTGLSSIVVQDVGERATAGKDLRPTIK
LVDAQGNDILVAGSDIPAQYTLPGKAIVTLEDGAEVHVGDSLARIPQESAGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPTEGEVYEEMIPKWRQLNVFE
GEMVERGDLISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKAIITKAYDSEFLEGEQVEVARVKMVNQKREAEGKPLVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQQRQKNRAAGIIEP
EQPTKASTISDEEIASEFTFTADDATASLAEMLNMAEDAE
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagttaagtttttaaaagcacaatctaaatccagcgaagattttgatgtg
atcaaaattggtttagcctcaccggatatgatccgttcttggtcatttggtgaagttaag
aaacctgaaaccatcaactaccgtacgtttaaaccagagcgtgacggacttttctgtgcg
cgtattttcgggccagtaaaagactacgaatgtttatgcggaaaatataaacgcttaaaa
caccgtggggtaatttgtgaaaaatgtggcgtagaagtgacacaagcaaaagttcgccgt
gaacgtatgggtcatattgagcttgcttcacctgttgctcatatctggttcttaaaatct
ttaccgtcccgtatcggcttattattagatatgccgttgcgtgatattgaacgtgtactt
tattttgaatcttacattgttactgagccaggaatgactgatcttgaaaaaggtcaatta
ttaacggaagaacaatatatagacgcagaagaccgttggggcgatgaatttgaagctaaa
atgggtgcagaagcgatccaagcgttattgcgtgatatggatctagaagtggaatgtgaa
accttgcgtgaagagttgcaagaaaccaattcagaaaccaaacgcaaaaaaatcactaag
cgcttaaaattattagaatctttcattcaatcaggtaataaacctgaatggatggtgatg
accgtattgccagtgttaccaccagatttacgtccattagttccacttgatggcggacgt
tttgccacttcagatttgaacgatttatatcgccgtgtgatcaaccgtaataaccgttta
aaacgcttattagacttgattgcgccagatattatcgtgcgtaacgaaaaacgtatgtta
caagaatctgttgatgcattattggataatggtcgccgtggccgtgcaattaccggttct
aaccgccgtccattgaaatcacttgcggatatgatcaaaggtaaacaaggtcgtttccgt
caaaacttattgggtaaacgtgtagattactcaggccgttctgtaatcaccgtagggcca
tacttacatctacatcaatgtggtttaccgaaaaaaatggcgttggaattattccgtcca
tttatttatgccaaattagaaagccgtggctttgcaactacaatcaaagcagcgaagaaa
atggttgagcgtgaagacgcaatcgtatgggatattttggcagaagtaattcgtgaacac
ccaatcctattgaaccgtgcgccgaccttgcaccgtttgggtattcaagcctttgagccg
attttaattgaaggtaaagcgattcaattgcaccctttagtgtgtgcggcgttcaacgcg
gacttcgatggtgaccaaatggcggttcacgtgccattaacccttgaagcacagcttgaa
gcacgtgccttgatgatgtcaaccaacaacattctttcaccagcaaatggtgagccgatt
atcgtaccatcacaggacgttgtattaggtctttactatatgactcgtgataaagtgaac
ggtaaaggcgaaggaatgttattgcaagatccacgcgaagcggagaaagcttaccgtaca
ggtcaagcggaattacattctcgtgtgaaagtgcgtatcacagaatatgtgaaagatgcc
tctaacgaatttgtgccgcaaaccagccttgtggataccacaattggtcgtgccatttta
tggatgatcgcaccaaaaggtatgccatttagcttgttcaaccaaaccttaggcaaaaaa
gcgatttcaaaattaattaacgaaagctatcgccgtttagggttgaaagcgagcgtattg
tttgctgaccaaattatgtacactggtttcgcttacgctgcacgttcaggttcatcagta
ggtattgacgatatggtgatcccagcgaagaaatatgaaattatttcagccgcagaacaa
gaagttgcagaaatccaagagcaattccaatcaggtttggtaacagcaggtgagcgttat
aacaaagtaatcgatatttgggcagcagcgaatgaacgtgttgccaaagcgatgatggaa
aacctttctcaagaagaagtaatgaaccgtgaaggggagttagaaaaacaagcttcattt
aacagcatctttatgatggctgactcaggggcgcgtggttctgcggctcagattcgtcag
cttgcaggtatgcgtggtttgatggcgcgtccagacggctcaatcatcgaaacgccaatt
accgcgaacttccgtgaaggtttgaacgtacttcagtactttatttcaacccacggtgcg
cgtaaaggtttggcggataccgcattaaaaactgcgaactctggttacttaacccgccgt
ttagtagatgtggcacaagatttagtaatcatcgaagatgactgtggcacttacgaaggt
atcgtaatgaccccattaatcgaggggggagatgtaaaagaacctctgcgtgatcgtgtg
ttaggtcgtgtggcggcagaagacatcttaaaaccgggtacagacgaagttttaattccg
cgtaatactttattagatgaaaaactttgtgatctgattgatgaaaattccgtagatagc
attaaagtacgctctgttgtaacctgtgacaccaactttggtgtgtgtgcgaaatgttac
ggacgcgatcttgcacgcggacaccttatcaaccaaggtgaagccgtgggggttatcgct
gcgcaatcaatcggtgagccgggtacacagctaacgatgcgtacgttccatatcggtggt
gcggcatctgcggcagcgaaagaatcaagcattcaagttaagaataacggtactttacgt
ttagccaacgtgaaattcgtgacgaataaagaaggcaaattggtcttaacttcgcgtaac
acggaattaaccattattgacgcatttggtcgtaccaaagagcattataaagtgccttac
ggtgcagtgttaaacaaagcagatggcgatgaagtgaacgcaggcgaaatcgtagcgaac
tgggatccacatacaatgccagtggtttctgaagtatcaggtttcgtgaaattcgtagat
attactgacggtgtaactgtaactcgtcaaactgatgaattaactggtttatcttcaatc
gtagtacaagatgtgggtgaacgtgcaacagcaggtaaggatttacgtccaaccattaaa
cttgttgatgcgcaaggcaacgacattcttgttgcaggttcagatataccagcacagtac
accttgccaggtaaagcgattgtaacccttgaagatggtgcggaagttcacgtgggggat
tctcttgcgcgtattccacaagaatcagcgggaacaaaagatattaccggtggtcttcca
cgcgtagcggatctctttgaagcacgtaaaccgaaagagccagcaattctagcagaaatt
tcgggtattgtttctttcggtaaagaaaccaaaggtaaacgccgcttactcatcacgcca
actgagggcgaagtgtacgaagaaatgattccaaaatggcgtcagctcaacgtatttgaa
ggtgaaatggtagaacgtggggatctcatttctgatggtgcagaaacgccacacgatatt
ctacgcttgcgcggtgtacacgcagtaactgattacatcgtaaacgaagtgcaagaagtt
taccgcttacaaggggtaaaaattaacgataaacatatcgaagtgatcgttcgccaaatg
ttgcgtaaagccatcatcactaaggcttatgactctgagttcttagagggtgagcaagtg
gaagtggcacgcgtgaaaatggttaaccaaaaacgcgaagcggaaggaaaaccattagtg
gaatttgagcgtgaattattgggtatcaccaaagcctcattggcgacagaatcctttatc
tcagcggcctcattccaagaaaccacccgcgtgcttacagaagccgcagtggcaggtaaa
cgcgatgaattgcgtggcttgaaagagaacgttatcgttggtcgtttgattccagcaggt
acaggttttgcgtatcaccaacaacgccagaaaaaccgtgctgcaggtatcattgaacct
gaacagccaaccaaagcatcaaccatttctgatgaagaaattgcatcagaatttaccttc
accgcagacgatgcaaccgcaagtcttgctgaaatgttaaatatggcagaagatgcagaa
taa
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integrated database retrieval system
