Azoarcus sp. DN11: CDA09_19560
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Entry
CDA09_19560 CDS
T05691
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
azd
Azoarcus sp. DN11
Pathway
azd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
azd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CDA09_19560 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
azd03021
]
CDA09_19560 (rpoB)
03400 DNA repair and recombination proteins [BR:
azd03400
]
CDA09_19560 (rpoB)
Enzymes [BR:
azd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CDA09_19560 (rpoB)
Transcription machinery [BR:
azd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CDA09_19560 (rpoB)
DNA repair and recombination proteins [BR:
azd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CDA09_19560 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AYH45552
LinkDB
All DBs
Position
complement(4208740..4212873)
Genome browser
AA seq
1377 aa
AA seq
DB search
MAYSYTEKKRIRKSFAKRATVLNVPFLLATQIESFASFLQAETPPMSRLNQGLQAAFTSI
FPIVSHSGNARLEFVQYMLGEPAFDVKECQQRGLTFASPLRARVRLVILDRDAPKETVKE
VKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDCLFFRVDRRRKMPATILLRAIGMTPEQILDTFHDFDTFQLKGEE
IAFELVPDRLRGDVAKFDITDDSGRIIVARDKRITAKHIREIEQAGIKTMVVPEEFLLGR
IIARNVVDPETGELIARANDEITEDLLGKLRDAAVKELQTLFVNDLDRGPYISQTLRIDE
TADQWAARVAIYRMMRPGEPPTEEAVEALFQGLFYAEERYDLSSVGRMKFNRRAYPEKIE
DKAPGWLKRFYGAVGARGEEGPATLSNEDILAVMGVLVELRNGRGEIDDIDHLGNRRVRS
VGELAENQFRAGLVRVERAVKERLSQAESDNLMPHDLINAKPISAAIKEFFGSSQLSQFM
DQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL
AVYAQTNRHGFLETPYRKVTDGKVTDQIDFLSAIEEGQYVIAQANADVGEDGSLQGDLVS
CRHKGEFLLATADQVQYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRP
EKPLVGTGIERTVAVDSGTAVQAMRGGVVDYVDANRIVVRVNDDETLAGEVGVDIYNMIK
YTRSNQNTNINQRPIVKVGDLIGRGDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDS
ILISERVVAEDRFTSIHIEELTVVARDTKLGPEEITRDIASLGEAQLSRLDESGIVYIGA
EVDAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMNGTVIDVQVFT
REGIERDKRAQSIIDDMLRSFKTDLADQMRIVERDAFARIRRLITGQKANGGPKKLAKGA
EITGEYLDSLEFYHWFDIRMADEELAAQLEAVREGLEKTRKDFEQAFEIKKKKLTQGDEL
PPGVQKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSRIVPIEDMPHMADGTPVDIVLNPLG
VPSRMNIGQILETHLGWAAKALGNKIGEMVRSNAAAAEIRGLLEQIYNTKGRPEALDTLD
DREVVELASNLRKGVPFATPVFDGAKEEEIEAMFALAGIESGGQVTLYDGRTGEAFDRKV
TVGYKHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY
TLQEMLTVKSDDVTGRTKVYESIVKGEHKIDAGMPESFNVLVKEIRSLAIDIDLDTY
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atggcgtattcctacaccgaaaagaaacgtatccgcaagagtttcgccaagcgcgcgaca
gtgctgaacgtccctttccttctcgccacccagatcgaatccttcgcttcgttcctgcag
gctgaaacgccgccgatgtcgcgcctgaaccagggcttgcaggccgcctttacgtcgatt
ttcccgatcgtcagccacagcgggaacgcgcggcttgaattcgtccagtacatgcttggt
gagccggcgttcgacgtcaaggaatgtcagcagcgcggcctgacctttgcttcgccgctg
cgcgcgcgcgtgcgcctggtcattctcgaccgcgacgcgcccaaggagacggtgaaggaa
gtcaaggagcaggaggtgtacatgggcgagatcccgctcatgacctctaccggttcgttc
gtgatcaacggcaccgagcgcgtcatcgtctcgcagctgcaccgttcgccgggtgtgttc
ttcgagcacgaccggggcaagacccattcgtccggcaagctgctcttctcggcgcgcatc
atcccctaccgcggctcgtggctcgacttcgagttcgacccgaaggactgcctgttcttc
cgcgtcgaccgccgccgcaagatgcctgcgacgatcctgctgcgcgcgatcggcatgacg
cccgagcagatcctcgacactttccacgatttcgacacgttccagctcaagggcgaagag
attgccttcgaactggtgcccgatcgcctgcgcggtgacgtcgcgaagttcgacatcacc
gacgattcgggtaggatcatcgtcgcgcgcgacaagcgcattaccgcgaagcacatccgc
gagatcgaacaggccggcatcaagacgatggtcgtgccggaggagttcttgctggggcgg
atcatcgcccgtaacgtcgtcgatcccgaaaccggcgaactgatcgcgcgcgccaacgac
gagatcacggaagatctgctcggcaagctgcgcgatgcagccgtcaaggagctgcagacc
ctgttcgtcaatgacctcgatcgcggtccgtacatttcgcagacgctgcgcatcgacgag
acggccgaccagtgggccgcgcgcgtcgcgatctaccgcatgatgcgcccgggcgagcct
cccaccgaggaagcggtcgaggcactgttccaggggctcttctatgcggaagagcgttac
gacctgtcgtcggtcggccgcatgaagttcaaccgccgcgcctatccggaaaaaatcgaa
gacaaggcaccgggctggctcaagcgcttctacggggcggtcggcgcccgcggagaagag
ggcccggcgacgctgtcgaacgaagacatcctcgcggtgatgggcgtgctcgtcgagctg
cgcaacggtcgcggcgagatcgatgacatcgaccatctcggcaaccggcgtgtgcgctcg
gtcggcgaactcgccgaaaaccagttccgcgcgggcctcgtccgtgtcgagcgcgccgtc
aaggagcgcctgtcgcaggctgagtcggacaacctgatgccgcacgacctgatcaacgcg
aagccgatttcggccgcgatcaaggaattcttcggatcgagtcagttgtcgcagttcatg
gaccagaccaacccgctgtccgagatcacgcacaagcgtcgtgtgtcggctctcggcccg
ggcggtctgacgcgcgagcgcgccggtttcgaggtgcgcgacgtgcatccgacgcactac
ggccgcgtgtgcccgatcgagacgccggaaggcccgaacatcggcctgatcaactcgctc
gcggtgtatgcccagaccaaccgccacggcttcctcgagacgccgtaccgcaaggttacc
gatggcaaggtcaccgatcagatcgacttcctctccgcgatcgaggaaggccagtacgtg
atcgcgcaggcgaacgccgacgtcggcgaagatggttcgctgcagggtgacctcgtgtcg
tgccggcacaagggcgaattcctgttggcgacggcggaccaggtccagtacatggacgtc
gcgccgggccagatcgtgtcggtcgcggcttcgctgattccgttcctcgagcacgacgac
gcgaaccgcgcgctgatgggcgcgaacatgcagcgtcaggcggttccctgcctgcgtccc
gagaagccgctggtgggcaccggcatcgagcgtaccgtcgccgtcgactccggcaccgcc
gtgcaggcgatgcgtggcggcgttgtcgactatgtcgatgccaaccggatcgtggtgcgt
gtcaacgacgatgagaccctcgcgggcgaagtcggcgtcgacatctacaacatgatcaag
tacacgcgctcgaaccagaacacgaacatcaaccagcgtccgatcgtgaaggtcggtgac
ctgatcggcaggggcgacgtcatcgccgacggtgcctcgaccgacctgggcgaactcgcg
ctcggccagaacatgctggtcgcgttcatgccgtggaacggctacaacttcgaggactcg
atcctcatctccgagcgcgtcgtcgccgaagaccgcttcacctcgatccacatcgaggaa
ctcaccgtcgtcgcgcgcgacaccaagctcggacccgaggaaatcacccgcgacatcgcg
tcgctgggcgaagcgcagctgtcgcgcctcgacgagtcgggcatcgtctacatcggcgcc
gaagtcgatgcgggcgacgtgctggtcggcaaggtcacgccgaagggcgaaacccagctg
acgccggaagagaagctgctgcgcgcgatcttcggcgagaaggcctcggatgtgaaggac
acctcgctgcgcgtgccttcgggcatgaacggcaccgtcatcgacgtgcaggtgttcacg
cgcgaaggcatcgagcgcgacaagcgcgcgcagtcgatcatcgacgacatgctgcgcagc
ttcaagaccgacctcgcggaccagatgcgcatcgtcgaacgcgacgccttcgcacgtatc
cgccgtctgatcaccggccagaaggccaacggcggtccgaagaagctggcgaagggcgcc
gagatcaccggcgaatacctcgactcgctcgagttctaccactggttcgacatccgcatg
gcggacgaggaactggcggcgcagctcgaagcggtgcgcgaaggtctggagaaaacccgc
aaggacttcgagcaggccttcgagatcaagaagaagaagctcacccagggtgacgaatta
cccccgggcgtgcagaagatggtgaaggtctacctcgccgtgaagcgccgcctgcagccc
ggcgacaagatggcgggccgccacggcaacaagggcgtcgtgtcgcgcatcgttccgatc
gaggacatgccgcacatggccgacggcacgccggtcgacatcgtgctgaacccgctcggc
gttccgtcgcgtatgaacatcggccagatcctcgagacgcatctgggctgggcggcgaag
gcgcttggcaacaagatcggcgagatggtgcggtcgaatgccgccgctgccgagattcgg
ggcctgctcgagcagatctacaacacgaagggtcggccggaggcgctcgacaccctcgac
gaccgggaagtggtcgaactcgcgtcgaacctgcgcaagggggtgccgttcgcgacgccg
gtgttcgacggtgcgaaggaagaggagatcgaggcgatgttcgcgctggccggcatcgag
tccggcggccaggtcacgctgtacgacggccgcaccggcgaagccttcgatcgcaaggtc
accgtcggctacaagcacgtgctcaagctgcaccacctcgtcgacgacaagatgcacgcg
cgttccaccggcccgtattcgctcgtcacgcagcagccgctgggcggcaaggcgcaattc
ggcggccagcgtttcggcgaaatggaagtgtgggcgctcgaggcctacggcgccgcctac
acgctgcaggaaatgctcaccgtgaagtccgacgacgtgaccggccgtaccaaggtgtac
gaaagcatcgtcaagggcgagcacaagatcgacgcgggcatgcccgagtccttcaacgtg
ctggtgaaggaaatccgctcgctcgcgatcgacatcgatctggacacgtactga
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integrated database retrieval system
