Burkholderia ambifaria MC40-6: BamMC406_0268
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Entry
BamMC406_0268 CDS
T00684
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bac
Burkholderia ambifaria MC40-6
Pathway
bac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BamMC406_0268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bac03021
]
BamMC406_0268
03400 DNA repair and recombination proteins [BR:
bac03400
]
BamMC406_0268
Enzymes [BR:
bac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BamMC406_0268
Transcription machinery [BR:
bac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BamMC406_0268
DNA repair and recombination proteins [BR:
bac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BamMC406_0268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
UbiD
BSH_YknX
BSH_CzcB
Nif11
Motif
Other DBs
NCBI-ProteinID:
ACB62769
UniProt:
B1YRC2
LinkDB
All DBs
Position
1:312016..316122
Genome browser
AA seq
1368 aa
AA seq
DB search
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADVPGTQRKPEGLQAAFTSV
FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVILDKESPNKPVVK
EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMDE
GAQLEFVPERLRGEVARFDITDRDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDYLLG
RVLAKNVVDGDTGEVIASANDEVTESVLEKLREAGIKEIQTLYTNDLDQGPYISSTLRVD
ETTDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGRDEI
TGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
VDSKVTDQIDYLSAIEEGRYMIAQANAAIDENGQLVDELVSSREAGETMMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVDSGT
TVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKMG
DKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWFDIR
LADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGWRIGEMLQRQAKIEEMRAFLTKIYNDSGRKEDLESFTDDEILELAKNLREGVPFAT
PVFDGATEEEMGKMLDLAFPDDIAEQLGMNPSKNQVRLYDGRTGEMFERRVTLGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcaatattccttcaccgagaagaagcgcattcgcaagagtttcgcgaagcgccccatc
gttcaccaagttccgttcttgctggccacccagcttgaatcattcagcacgtttctgcaa
gccgatgtgccgggcacgcaacgcaagcctgaaggtttgcaggccgccttcacatcggta
tttcccattgtttcgcacaacggtttcgcgcgcctcgagttcgtgagctatgcgctgtcc
tcgccggcattcaacatcaaggaatgccagcagcggggcctgacgtactgctccgcgctg
cgcgcgaaggtccgcctcgtcatcctcgacaaggaatcgccgaacaagccggtcgtcaag
gaagtgaaggagcaggaagtgtacatgggcgaaattccgctcatgacgccgacgggctcg
ttcgtcatcaacggcaccgagcgtgtcatcgtctcgcagctgcaccgttcgccgggcgtg
ttcttcgaacacgacaagggcaagacgcacagctcgggcaagctgctgttctcggcacgg
atcattccgtaccgcggctcgtggctcgacttcgaattcgatccgaaggacatcctgtac
ttccgcgtcgaccgtcgccgcaagatgccggtcacgatcctgctgaaggccatcggcctc
acgccggaacagatcctcgcgaacttcttcgtgttcgacaacttcacgctgatggacgaa
ggcgcgcaactcgagttcgtgcccgagcgcctgcgtggtgaagtcgcgcgcttcgacatc
acggatcgcgacggcaaggtcatcgtccagaaggacaagcggatcaacgcgaagcacatt
cgcgacctcgaagccgcgaagaccaagttcatctcggtgccggaagactatctgctcggc
cgcgtgctggcgaagaacgtcgtcgacggcgacaccggcgaagtgatcgcgagcgcgaac
gacgaagtcacggaaagcgtgctcgagaagctgcgcgaagcgggcatcaaggaaatccag
acgctctacacgaacgatctggaccagggtccgtacatctcgtcgacgctgcgtgtcgac
gaaacgaccgacaagacggccgcacgcattgcgatctaccgcatgatgcgtccgggcgag
ccgccgaccgaagaagcggtcgaggcgctgttcaaccgtctgttctacagcgaagaagcg
tacgacctgtcgaaggtcggccgcatgaagttcaaccgccgcgtcggccgtgacgagatc
accggcccgatgacgctgcaggacgacgacatcctcgcgacgatcaagatcctcgtcgaa
ctgcgcaacggcaagggcgaagtggacgacatcgaccacctcggcaaccgccgcgtgcgt
tgtgtcggcgaactggcggaaaaccagttccgcgcgggtctcgtgcgtgtcgagcgcgcg
gtcaaggaacgcctcggccaggccgaaagcgaaaacctgatgccgcacgacctgatcaac
tcgaagccgatttcgtcggcgatccgcgagttcttcggttcgtcgcagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgccgtgtttccgcactgggc
ccgggcggtctgacgcgcgaacgcgcaggcttcgaagttcgtgacgtgcacccgacccac
tatggccgcgtgtgcccgatcgaaacgccggaaggtccgaacatcggcctgatcaactcg
ctcgcactgtacgcgcacctgaacgagtacggcttcctcgagacgccgtaccgcaaggtc
gtggacagcaaggtgaccgaccagatcgactacctgtcggcgatcgaggaaggccgctac
atgatcgcccaggcgaacgccgcgatcgacgagaacggccagctggtcgacgaactcgtg
tcgtcgcgtgaagccggcgaaacgatgatggtcacgccggaccgtatccagtacatggac
gtcgcgccgtcgcagatcgtgtcggttgcagcctcgctgatcccgttcctcgagcacgac
gatgcgaaccgtgcactgatgggctcgaacatgcagcgtcaggccgtgccgtgtctgcgt
ccggagaagccggtcgtcggtacgggcatcgagcgcacctgcgcggtcgactcgggcacg
acggttcaggcgttccgcggcggcgtcgtcgactatgtcgacgcaggccgtatcgtgatt
cgcgtgaacgacgacgaagccgtcgcgggtgaagtcggtgtcgacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaaccagcgtccgatcgtgaagatgggc
gacaaggtctcgcgcggcgacgtgctggccgacggcgcctcgacggacctgggcgagctc
gcgctcggccagaacatgctgatcgcgttcatgccgtggaacggctacaacttcgaggat
tcgatcctgatctcggaaaaggtggtcgccgacgatcgctacacgtcgatccacatcgaa
gagctgaacgtcgttgcacgcgacacgaagctcgggccggaagaaatcacgcgcgacatc
tcgaacctggcggaagtccagctcggccgtctcgacgaatcgggcatcgtatacatcggt
gcggaagtcgaagcgggcgacgtgctggtcggcaaggtcacgccgaagggcgagacccag
ctgacgccggaagagaagctgctgcgcgcgatcttcggcgagaaggcatcggacgtgaag
gacacgtcgctgcgcgtgccgtcgggcatgagcggcaccgtgatcgacgtccaggtgttc
acgcgtgaaggcatccagcgcgacaagcgtgcgcaacagatcatcgacgacgaactgaag
cgctaccgtctcgacctgaacgaccagctgcgcatcgtggaaggcgacgcgttccagcgt
ctcgcgcgcatgctcgtgggcaaggtcgcgaacggcggtccgaagaagctcgcgaagggc
acgaagatcgaccaggcttacctggaagacctcgaccactaccactggttcgacatccgc
ctcgcggacgacgaagcagcggcgcagctcgaagcgatcaagaactcgatcgaggaaaag
cgtcaccagttcgacctcgcgttcgaagagaagcgcaagaagctcacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtacctcgcggtgaagcgtcgtctgcag
cctggcgacaagatggcaggccgtcacggtaacaagggtgtcgtgtcgaagatcgtcccg
atcgaagacatgccgtacatggccgacggccgtccggccgacgtcgtgctgaacccgctc
ggcgtgccgtcgcggatgaacgtgggtcaggttctggaagtgcacctcggctgggccgcg
aagggcctcggctggcgtatcggcgaaatgctgcagcgtcaggcgaagatcgaggaaatg
cgcgcattcctgacgaagatctacaacgactcgggccgcaaggaagatctggaaagcttc
accgacgacgagatcctcgaactcgcgaagaacctgcgcgaaggcgtgccgttcgcgacg
ccggtgttcgacggtgcgaccgaggaagaaatgggcaagatgctcgacctcgcgttcccg
gacgacatcgccgagcagctcggcatgaacccgtcgaagaaccaggtccgtctgtacgac
ggccgcacgggtgaaatgttcgaacgtcgcgtgacgcttggctacatgcactacctgaag
ctgcaccacttggtcgacgacaagatgcacgcgcgttcgacgggcccgtactcgctcgtc
acgcagcagccgctgggtggtaaggcgcagttcggtggccagcgtttcggtgaaatggaa
gtgtgggcactcgaagcgtacggcgcgtcctacgtgctgcaggaaatgctgacggtgaag
tcggacgacgtgaacggccggaccaaggtctatgagaacctggtcaagggcgatcatgtc
atcgatgcaggcatgccggaatccttcaacgtgctcgtgaaggaaatccgctcgctcggt
atcgatatcgatctcgaccgcaattaa
DBGET
integrated database retrieval system
