Bacillus sp. S3: FAY30_01990
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Entry
FAY30_01990 CDS
T08283
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
baca
Bacillus sp. S3
Pathway
baca03030
DNA replication
baca03410
Base excision repair
baca03420
Nucleotide excision repair
baca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
baca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FAY30_01990 (ligA)
03410 Base excision repair
FAY30_01990 (ligA)
03420 Nucleotide excision repair
FAY30_01990 (ligA)
03430 Mismatch repair
FAY30_01990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
baca03032
]
FAY30_01990 (ligA)
03400 DNA repair and recombination proteins [BR:
baca03400
]
FAY30_01990 (ligA)
Enzymes [BR:
baca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FAY30_01990 (ligA)
DNA replication proteins [BR:
baca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FAY30_01990 (ligA)
DNA repair and recombination proteins [BR:
baca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FAY30_01990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FAY30_01990 (ligA)
MMR (mismatch excision repair)
DNA ligase
FAY30_01990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FAY30_01990 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
RNA_pol_A_CTD
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QCJ40774
LinkDB
All DBs
Position
411880..413886
Genome browser
AA seq
668 aa
AA seq
DB search
MDLQIAEQKINEIRSLLNQYGYEYYVLDNPSVPDAEYDKLMQELLELEAKFPELKSIDSP
SVRVGGAVLDLFEKVEHRTPMLSLGNAFNEQDLRDFDRRVRQAAGDEISYVCELKIDGLA
VSLRYEDGLFVQGATRGDGTIGEDITANLKTIKSIPLRLRENVSLEVRGEAFMPKRSFDA
LNQAREERGEEQFANPRNAAAGSLRQLDPKIAASRRLDVFLYGIGNTGASGVVSHSEGLD
YLDHLGFKTNKERRKCTTIDDVIQYVNGWVEKRPHLPYEIDGIVIKLDSLAQQAALGTTA
KSPRWAIAYKFPAEEVVTTLLAIELSVGRTGVVTPTALLEPVKVAGTTVQRASLHNEDLI
REKDIKLGDKVVVKKAGDIIPEVVNVLADQRTGSEVDFYMPTHCPECESELVRLEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFAVKLIGDVADIYKLTREQLLAL
ERMGEKSVSNLLKAIETSKGNSLEKLLFGLGIRHVGAKAAKTLAQQFGSMGKLVEAAKED
LIAINEIGDKMADSIVAFFEQEEAGELIDELAAAGVNMEYKGVKPVAAEESDSIFAGKTV
VLTGKLEQLSRNEAKEKIEALGGNVSGSVSKKTHLVIAGEDAGSKLTKAQELGIEVWDEE
KLLVELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaccttcaaatcgcggaacagaaaatcaatgaaatcagaagcctgttaaatcaatat
ggctatgaatattatgtgctagacaacccatcagtaccggacgcggaatatgacaagctg
atgcaggaacttttggagcttgaagcaaagttcccggagctaaaatcaatagattccccg
tccgtccgtgttggcggtgcggtgcttgacctgtttgagaaggtggaacatcgcaccccg
atgctaagtttaggtaatgcttttaacgaacaggacttacgggattttgaccgccgggtt
cgtcaggcagcaggggatgagatatcctatgtttgtgagttgaaaattgacggccttgcc
gtctcattacgatatgaagatggtctatttgttcaaggcgccacccgcggtgacggcaca
atcggtgaagatattactgcaaatttaaagaccattaaatcaatcccgcttcgcttacgg
gaaaatgtttctttagaggtccgcggtgaagccttcatgccaaaacgttcatttgacgcc
ttaaatcaggctcgagaagagcgcggtgaggagcagtttgccaacccaagaaatgcggct
gccggatcgttaaggcagcttgatccaaaaattgccgcgtcgagaagactggatgtcttt
ttatatgggatcggcaacacaggagccagtggagttgtttcccatagtgaaggactggat
tatttagatcatctaggctttaaaacgaataaagaacgaagaaaatgtaccacaattgac
gatgtcatccagtatgtgaatggctgggtagaaaaacgcccgcatctaccctatgaaatt
gatgggattgttattaaacttgattccttagcgcagcaggcggcacttggcacaacggca
aaaagtccgcgctgggcaattgcgtataagtttccggctgaagaagtggttacaacactt
ttggctatcgaattaagtgtcgggagaacgggtgtggtcactccgactgcactgcttgaa
cctgtaaaggtggcaggaacaaccgtacagagggcatccttgcacaatgaagatttaatc
cgtgaaaaggatataaaactgggagataaagttgtcgtcaaaaaagcaggcgatatcatt
ccggaagtggtcaatgttttagctgatcagcggacgggcagtgaagtcgatttctatatg
ccgacgcattgtccagaatgtgaaagtgagcttgtccgtcttgaaggagaggtagcactg
cgctgcattaatccgaaatgtccggcacaaattcgcgaaggcttaattcactttgtctcg
cgtaatgccatgaatattgatggtcttggggaaaaagttatcagtcagctttttgctgta
aaattaatcggtgatgtagccgatatatataagcttacccgtgaacagcttttagccctc
gaaagaatgggggaaaagtctgtttccaatctattaaaagcgattgaaacgtcaaaaggg
aattcccttgaaaagctgttatttggtctgggaatccgccatgttggggcaaaggcagca
aaaacgctggcccagcaatttggttccatgggaaaattagttgaagctgcgaaagaagat
ttaattgccatcaatgaaatcggcgataaaatggcagattccattgttgccttttttgaa
caagaagaagcaggggaactaatcgatgaactggctgctgccggagtaaatatggaatat
aaaggtgtgaagcccgttgccgccgaagagtctgactctatttttgccgggaaaacggtt
gtccttacaggaaaactcgagcagttatcacgcaatgaagccaaggaaaaaattgaagcg
cttggcggcaatgtttccgggagcgtcagtaaaaaaacacatcttgtcattgcgggtgaa
gatgcgggttccaagttaacaaaagcacaagaactggggattgaagtgtgggacgaggag
aagcttttagtagaattaaataaataa
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