KEGG   Bacillus sp. Y1: DOE78_15205
Entry
DOE78_15205       CDS       T05922                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bacq  Bacillus sp. Y1
Pathway
bacq03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bacq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DOE78_15205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bacq03400]
    DOE78_15205
Enzymes [BR:bacq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DOE78_15205
DNA repair and recombination proteins [BR:bacq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DOE78_15205
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AYA76682
UniProt: A0A385NS21
LinkDB
Position
3112416..3114245
AA seq 609 aa
MKPMLPTLTFEVPQGDNWNYEVKYDGFRALLFWDKEIKLISRNGNSLLEIFPEIKLYLEK
NNELFKEFLPLVLDGELVYLENEYKAHFSSIQVRGRMRSEKKILEKALHNPCRLLVFDLL
SLNGKSYSDRNYVDRKKALLKLFEDCHLPTAPDPVSSDLIQLIPASKDYQAVWEQVVLHD
GEGIVAKQDTNQWEEGKRTTLWLKFKNFKYVSCFVTAYEKSNGYFYVGVYKDTNIYPIGQ
FLFGIKPEEKQALFQIIKENKTKEDDRFIYVQPAICLEIKYLELYDEQMREPHFERFQFD
LSPEDCTFEKFVHQQKNLPKDIDVTHPDKPLWEKPAVKKIDFIRYLQEISPYLLPFLHNR
LLTVIRYPHGMFGEAFYQKNCPDYAPEFVQTALHDGINYIVCNNLKTLLWLGNQLAFEFH
IPFQTLSSHGPSEIVLDLDPPSKKEFKLAIKAAQMIKEVLDHLNLIGFVKTSGNKGLQIY
IPLPENEFSYDDTRLFTEFIAEYLISKAPNSFTIERLKKNRQNKLYIDYIQHAEGKTIVA
PYSARGNDTAALATPLFWDEVTDELRMEDFTILNMMKRINEKGDPFQSYFETKQKQNFSP
ILEFLKQKK
NT seq 1830 nt   +upstreamnt  +downstreamnt
gtgaaaccaatgctacctactttaacattcgaggtaccacagggtgataattggaactac
gaagtaaaatacgatggctttcgtgcgcttttattttgggataaggaaataaaattgata
agcagaaacggaaactccttacttgaaatttttccagaaattaaactttacctagaaaaa
aacaatgaattgtttaaagaatttctacccttggtgctcgacggggagttagtgtatctt
gaaaatgaatataaagcgcattttagcagcattcaagttcgaggcagaatgcgcagcgaa
aagaaaatacttgaaaaagcattgcataatccatgccgtctccttgtatttgacttatta
tcattaaacggaaaatcttacagtgataggaattatgttgatcgtaaaaaagcacttctt
aagctttttgaagactgtcacttacccacagctcccgaccccgtgagttcagatttaatt
cagctaattcccgcttctaaagattatcaagccgtttgggaacaagtcgttttacatgat
ggtgaaggaattgtggccaagcaagatacaaatcagtgggaggaaggcaaacgaaccact
ctttggttgaagttcaaaaactttaagtatgtttcctgctttgtcacagcatatgaaaag
tcaaatgggtatttttatgttggagtttacaaggataccaatatatatccaattggacaa
tttttatttggtattaaacccgaggaaaaacaagctctttttcaaattattaaagaaaat
aaaacaaaagaggatgaccgtttcatctacgttcaacccgctatctgcttagagattaag
tatttagaactttatgatgaacaaatgcgcgagcctcattttgaacggtttcaatttgat
ctttcacctgaggattgtacgtttgaaaaatttgttcatcagcaaaaaaatttacctaag
gatattgatgttacacatccagataagcccttatgggagaagccagcggtaaagaagatt
gattttattcgttatttacaggaaatttcaccgtatttattgccatttttacataaccga
ttattaaccgttattcgttatccacatggtatgttcggtgaagctttttatcaaaaaaac
tgtcctgactatgcacctgagttcgttcaaaccgccttacacgatggtatcaattatatc
gtttgcaataatttaaaaacgttattatggttaggtaaccagctggcatttgagttccat
attccttttcaaactctatctagtcacggaccaagtgaaattgtgttagatttggatcct
ccttctaaaaaggaatttaaactagctattaaagctgctcaaatgataaaagaagttctc
gaccatttgaatcttattggttttgtaaaaacgtcaggaaataaaggtctacagatatat
atccctcttcctgaaaatgaattttcttacgatgatacaagactgtttacggaattcatt
gcagaatatttaatctcgaaagcaccaaattcttttactatcgaacgcttaaagaaaaat
cggcaaaataaattgtatatcgactatatccaacatgcagaaggaaaaaccattgtggca
ccttattctgcaaggggaaatgatacagccgctctagccactcccttattttgggatgaa
gtaacagacgaacttcgtatggaggattttacgatcttaaacatgatgaagcgtataaat
gaaaaaggcgacccgtttcaatcctatttcgagacgaaacaaaagcagaacttttcaccc
attcttgaatttttaaaacaaaaaaaatag

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